View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_high_18 (Length: 398)
Name: NF1690_high_18
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 106307 - 106683
Alignment:
| Q |
1 |
ccccaacaggtttatctcaatcctttgatatactaatttagtaatgaatgtggtcttaaaaaactagacaggagtcattagcattatataatcacagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
106307 |
ccccaacaggtttatctcaatcctttgatatactaatttagtaatgaatgtggtcttaaaaaactagacaggtgtcattagcattatataatcacagaac |
106406 |
T |
|
| Q |
101 |
acattatctttttataaataatgtctactgatacagcatttgatcaaatttatttttaatggtttggcatatatttaatgtccaatgattg-tttcttgg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
106407 |
acattatctttttataaataatgtctactgatacagcatttgatcaaatttatttttaatggtttggcatatatttaatgtccaatgattgttttcttgg |
106506 |
T |
|
| Q |
200 |
ttttagtcatcctttattgaatttattctttttactggttctgataggagttatcttatcatgcttagtgcagttactcattcattaattgtaactttgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |
|
|
| T |
106507 |
ttttagtcatcctttattgaatttattctttttactggttctgataggagttatcttatcatgcctagtgcagtcactcattc----attgtaactttgc |
106602 |
T |
|
| Q |
300 |
aatgttaattctacttcttgttagttctttactatctagcatctagtttcttgttacatataaccaggaccaccatcaacg |
380 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
106603 |
aattttaattctacttcttgttagttctttactatctagcatctagtttcttgtaacatataaccaggaccaccatcaacg |
106683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University