View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_high_2 (Length: 795)
Name: NF1690_high_2
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 197 - 627
Target Start/End: Original strand, 26708085 - 26708515
Alignment:
| Q |
197 |
ttgacaaaaactacactttaaagtttttcacaaaataacagtttcaccatgttgaacgcttataagatgaacctaaaaacattaaaataggaaccttacc |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
26708085 |
ttgacaaaaactacactttaaaatttttcacaaaataacagtttcatcatattgaacgcttataacatgaacctaaaaacattaaaatagaaaccttacc |
26708184 |
T |
|
| Q |
297 |
tttttctaaaaaatgtaaaacaaaattgatgaataggcacaaggtatatcaaaaatcctacacctacattgttagatatagtcaaagacaggatttgata |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26708185 |
tttttctaaaaaatgtaaaacaaaattgatgaataggcacaaggtataccaaaaatcctacacctacattgttagatatagtcaaagagaggatttgata |
26708284 |
T |
|
| Q |
397 |
acaaagaattgagaatgatacaaatatggcgtcaagaccactgagcactctgaatattgaagcgacaaatttctctaaaaaggtataatttttgaaggga |
496 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26708285 |
acaaagaattgaaaattattcaaatatggcgtcaagaccactgagcactctgaatattgaagcgacaaatttatctaaaaaggtataatttttgaaggga |
26708384 |
T |
|
| Q |
497 |
caattttgaaaagatgcaaatgaaaggggaaggggaaaagtgacacgaaaatgcatcgggcagatgatggagaagagaaagctcggaaatgtgttgagct |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26708385 |
caattttgaaaagatgcaaatgaaaggggaaggagaaaagtgacacgaaaatgcatcgggcagatgatggagaagagaaagctcggaaatgtgttgagct |
26708484 |
T |
|
| Q |
597 |
ttgatgtgtttttcagaaaagacctatcact |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26708485 |
ttgatgtgtttttcagaaaagacctatcact |
26708515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 26707847 - 26707994
Alignment:
| Q |
19 |
tattgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26707847 |
tattgaaaacgaatatatatttgacattgattgtttgcacacaatcaattgagtagatggaagagagataataatgcaaatattgttttatttgaaattg |
26707946 |
T |
|
| Q |
119 |
gnnnnnnnaaagatactattataatctatatttgaattaaaagtgaat |
166 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26707947 |
gtttttttaacgatactattataatctatatttgaattaaaagtgaat |
26707994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 624 - 781
Target Start/End: Original strand, 26708654 - 26708811
Alignment:
| Q |
624 |
cactctttttatagtgttgaaacatgaatcatatcaaataaattcagnnnnnnnnctttcaatccacacacgcaacattctctatgttccaacatgaat- |
722 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26708654 |
cactctttatacagtgttgaaacatgaatcatatcaaataaattcagtttttt---tttcaatccacacacgcaacattctctccgttccaacatgaatc |
26708750 |
T |
|
| Q |
723 |
--atcaaataaatttttgtttgaccgagtcatgtcaaatcctttgaattatgttaagtatt |
781 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26708751 |
atatcaaataaatgtttgtttgaccgagtcatgtcaaatcctttgaattatgttaagtatt |
26708811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 26706299 - 26706205
Alignment:
| Q |
21 |
ttgaaaacgaatatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgttttatttgaaa |
115 |
Q |
| |
|
||||||| |||||||| ||| ||||| ||| ||||||||||||||||| |||| ||||||||| ||| |||| ||||||| |||||||||||| |
|
|
| T |
26706299 |
ttgaaaatgaatatattttttacattgattatttgcacacaatcaatgagttagacggaagagaggtaagaatggaaatattcttttatttgaaa |
26706205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 18443787 - 18443714
Alignment:
| Q |
32 |
tatatatttgacattaattgtttgcacacaatcaatggagtagatggaagagagataataatgcaaatattgtt |
105 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||| | ||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
18443787 |
tatatattcgatattgattgtttgcacacaatcaatagtgtagatggaagagaggtaagaatgcaaattttgtt |
18443714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University