View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_25 (Length: 353)
Name: NF1690_high_25
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 28674299 - 28674641
Alignment:
| Q |
2 |
tgctttgtagttccgattgtgaactcttgctcaggtcatggttggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaa |
101 |
Q |
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| T |
28674299 |
tgctttgtagtgcctatggttaactctggctcagggcatggtgggtaatagtgacacaagagaaaaaacttttcagcaccacccatttctttaaggtgaa |
28674398 |
T |
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| Q |
102 |
agtgattaagacctggagcttctgataataactcaaacaaagaataaccaagagcctttacttcttttgagtactcactcacaatatcactgcaggtttg |
201 |
Q |
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| T |
28674399 |
agcgattaagacctagagcttctgataataactcaaacaaagaataaccaagagcctttacttcttttgagtactcactcacaatatcactgcaggtttg |
28674498 |
T |
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| Q |
202 |
ttatcattagcaagtcatcaaaacaaggaactaaaaaaggaaataaggatattaacaccaatacactaaagaataatgacaatttgtcacacatctttag |
301 |
Q |
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| T |
28674499 |
ttatcattagcaagtcatcaaaacaaggaactaaaaaaggaaataaggatattaacaccaatacactaaagaataatgacaatttgtcacacttctttag |
28674598 |
T |
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| Q |
302 |
ttcgttcttgctgttatatattgacaatatactaaagaataat |
344 |
Q |
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| T |
28674599 |
ttagttcttgctgttatatattgacaatatactaaagaataat |
28674641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 28648906 - 28649056
Alignment:
| Q |
72 |
tttcagcaccacccatttctttaaggtgaaagtgattaagacctggagcttctgataataactcaaacaaagaataaccaagagcctttacttcttttga |
171 |
Q |
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| T |
28648906 |
tttcagcagcacccatttctttaaggtgaaagcgattaaggccaagagactctgacaataactcatacaaagaagatccaagtgccgttacttcttttgt |
28649005 |
T |
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| Q |
172 |
gtactcactcacaatatcactgcaggtttgttatcattagcaagtcatcaa |
222 |
Q |
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| T |
28649006 |
gtattcattcacaatatcactgcaagtttgttatcattagcaagtcatcaa |
28649056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 28639550 - 28639749
Alignment:
| Q |
23 |
aactcttgctcaggtcatggttggtaatagtgacacacaagaaataacttttcagcaccacccatttctttaaggtgaaagtgattaagacctggagctt |
122 |
Q |
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| T |
28639550 |
aactctggctcagggcatggtggataataatgacatagatggaaaaaactttcagcagcacccatttctttaaggtgaaagcgattaaggccaagtgact |
28639649 |
T |
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| Q |
123 |
ctgataataactcaaacaaagaataaccaagagcctttacttcttttgagtactcactcacaatatcactgcaggtttgttatcattagcaagtcatcaa |
222 |
Q |
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| T |
28639650 |
ctgacaataactcatacaaagaagatccaagtgccgttacttcttttgtgtattcattcacaatatcactgcaagtttgttatcattagcaagtcatcaa |
28639749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 28670465 - 28670588
Alignment:
| Q |
72 |
tttcagcaccacccatttctttaaggtgaaagtgattaagacctggagcttctgataataactcaaacaaagaataaccaagagcctttacttcttttga |
171 |
Q |
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|||||||| | |||||||||||||||||| || | |||||||| |||| ||||| |||||||| |||||||| | ||||| ||| |||||||||||| |
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| T |
28670465 |
tttcagcagcgcccatttctttaaggtgagagcggttaagaccgagagcctctgacaataactcgtacaaagaagatccaagtgccattacttcttttgt |
28670564 |
T |
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| Q |
172 |
gtactcactcacaatatcactgca |
195 |
Q |
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| T |
28670565 |
gtattcattaacaatatcactgca |
28670588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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