View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_3 (Length: 649)
Name: NF1690_high_3
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_3 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 5 - 639
Target Start/End: Original strand, 19292120 - 19292748
Alignment:
| Q |
5 |
gaggagatgtcctaaatgcaaattctatgttgccaaatctttaggcagtaactacatgacatgcaggttgcctttctatttaatcttctcttgctttgcg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292120 |
gaggagatgtcctaaatgcaaattctatgttgccaaatctctaggcagtaactacatgacatgcaggttgcctttctatttaatcttctcttgctttgcg |
19292219 |
T |
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| Q |
105 |
atcgatttcctgaatatataatattaaacaataattagggcaattttcaatctaaagagggactaaaatgagcaataagtttcaattttagtaacatgag |
204 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292220 |
at----ttcctgaatatataacattaaacaataattagggcaattttcaatctaaagagggactaaaatgagcaataagtttcaattttagtaacatgag |
19292315 |
T |
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| Q |
205 |
acaagagagagtttagtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggtttctaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292316 |
acaagagagagtttagtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggtttctaaa |
19292415 |
T |
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| Q |
305 |
gttgcttctagaagtggacttatttagatttttgtttggcttttcaagtttaaattatgatggatgtttttagcctataagctaatcttggttttagcag |
404 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19292416 |
gttgcttctagaagtggatttatctagatttttgtttggcttttcaagtttaaattgtgatggatgtttttaggctataagctaatcttggttttagcag |
19292515 |
T |
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| Q |
405 |
aacaatacacaaatatatgtagcaactttaggctatatattctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcat |
504 |
Q |
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| T |
19292516 |
aacaatacacaa--atatgtagcaactttaggc----tattctaaatttctctaaaatgttcttgaaatatgcatcaatttcaacccctccctaaggcat |
19292609 |
T |
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| Q |
505 |
atttcaagaaatcctagtatagtttctcatcactaaatcttacatttgtgaaat----tatctccatgcattgatgtcaataggtatcataattaatctt |
600 |
Q |
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||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19292610 |
attccaagaaatcctagtatagtttctcatcgcaaaatcttacatttgtgaaattatatatctccatgcattgatctcaataggtatcataattaatctt |
19292709 |
T |
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| Q |
601 |
taaaattctacatcctcctcttgtgacaatagatgatgt |
639 |
Q |
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| T |
19292710 |
taaaattctacatccacctcttgtgacaatagttgatgt |
19292748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 33798857 - 33798907
Alignment:
| Q |
245 |
ttacatatcaaaggtttgaatacaattgcacacatgtttgtctatttatag |
295 |
Q |
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| T |
33798857 |
ttacatctcaaaggcttgaatacaattgcacatatgcttatctatttatag |
33798907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 6389 - 6313
Alignment:
| Q |
220 |
gtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggt |
297 |
Q |
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| T |
6389 |
gtgaagccttcaatattatt-gacattgcatctcaaaggcttgaatacaatttcacccatataagtctatttataggt |
6313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 51246731 - 51246655
Alignment:
| Q |
220 |
gtgaagctttcaatattatttggcattacatatcaaaggtttgaatacaattgcacacatgtttgtctatttataggt |
297 |
Q |
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| T |
51246731 |
gtgaagccttcaatattatt-gacattacatcccaaaggcttgaatacaattgcacccatataagtctacttataggt |
51246655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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