View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_high_38 (Length: 302)

Name: NF1690_high_38
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_high_38
NF1690_high_38
[»] chr8 (11 HSPs)
chr8 (1-292)||(2018019-2018310)
chr8 (1-292)||(2014636-2014927)
chr8 (3-292)||(1963502-1963791)
chr8 (1-290)||(2004236-2004525)
chr8 (42-292)||(2436914-2437164)
chr8 (3-290)||(1969116-1969403)
chr8 (3-290)||(2007618-2007905)
chr8 (3-290)||(2011233-2011520)
chr8 (5-290)||(1965174-1965459)
chr8 (141-242)||(10201811-10201912)
chr8 (141-242)||(10208884-10208985)
[»] chr1 (2 HSPs)
chr1 (3-290)||(5906164-5906451)
chr1 (3-274)||(5902696-5902967)
[»] chr6 (2 HSPs)
chr6 (214-292)||(845007-845085)
chr6 (214-292)||(870291-870369)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2018019 - 2018310
Alignment:
1 gattcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018019 gattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgc 2018118  T
101 cattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018119 cattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtgg 2018218  T
201 cacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2018219 cacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 2018310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2014636 - 2014927
Alignment:
1 gattcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2014636 gattcttttaattccttcatatttttgcgcagtttcccaccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgc 2014735  T
101 cattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2014736 cattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtgg 2014835  T
201 cacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2014836 cacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 2014927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 1963791 - 1963502
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    |||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
1963791 ttctttaaattccttcatattattacgcagtttcccaccttcttccccttccatgagacacttgatcaactcagcaatttctaccctttccacaatgcca 1963692  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    ||||  |||| | |||||||||||||||||||||| |||||||  | |||||| ||||| ||||||||||||||| | |||||||| |||||||||||||    
1963691 ttctcgttaactcttggcctcagtcccacttttaggccttcacagagcaaaactgcatttgttctctgctcagcatacagaggccaagtgattagtggca 1963592  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    |||||| || |||||||||||| ||||||||||||||||| |||| ||| ||||||||||  |||||||||| |||||||||||||||||    
1963591 caccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtg 1963502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 2004236 - 2004525
Alignment:
1 gattcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgc 100  Q
    |||||||||||||||||||| || ||||||| |||| | ||||||||||||||||||||||||||||| | ||  ||||  | |||| ||||||| ||||    
2004236 gattcttttaattccttcatgttattgcgcaatttctcaccttcttccccttccatgagacacttgatcaccttagcaacctctaccctttccactatgc 2004335  T
101 cattctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtgg 200  Q
    |||| | |||||   ||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||    
2004336 cattttcattaacacttgccctcaatcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccatgttattagtgg 2004435  T
201 cacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    ||||||||||| ||||||||| || ||||||||||| ||||| |||||||||||||| || |||||  ||||||  ||||||||||||||    
2004436 cacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatttgaatctg 2004525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 42 - 292
Target Start/End: Complemental strand, 2437164 - 2436914
Alignment:
42 ttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccattctgattaatttttggcctcagtcccacttttagtcct 141  Q
    |||||| |||||||||||||||||||| | ||  ||||  | |||| |||||||||||||||| | || || | |||||||||||||||||||||||||     
2437164 ttcttctccttccatgagacacttgatcaccttagcaacctctaccctttccacaatgccattttcatgaactcttggcctcagtcccacttttagtccc 2437065  T
142 tcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccac 241  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||    
2437064 tcactcaacaaaaccgaattcgttctctgctcggcaaaaagaggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccac 2436965  T
242 agtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    ||||| ||||||| ||||||||||| ||||||| ||||||||||| |||||    
2436964 agtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtg 2436914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 1969403 - 1969116
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    |||||||||||||||||| || |||||||  ||| | |||||||| ||||||||||||| |||||| | ||   |||  | | |  |||||||||||||     
1969403 ttcttttaattccttcatgttattgcgcaacttctcaccttcttctccttccatgagacgcttgatcaccttaacaacctcttctctttccacaatgccg 1969304  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    || | ||||| | |||||||||||||||||||||| |||||||||| |||||| |||||| || ||||||||||||| | ||||||||||||||||||||    
1969303 ttttcattaactcttggcctcagtcccacttttaggccttcactcagcaaaacggcattcattttctgctcagcaaacaaaggccatgtgattagtggca 1969204  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    |||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||  ||||||  ||||||||||||||    
1969203 caccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctg 1969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 2007618 - 2007905
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    |||||||||||||||||| || ||||| | |||| | || || || |||||||||||| ||||||| | ||  ||||  | |||| ||||||| ||||||    
2007618 ttcttttaattccttcatgttattgcgtaatttctcaccctcgtctccttccatgagatacttgatcaccttagcaacctctaccctttccactatgcca 2007717  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    || | |||||   ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||  ||||    
2007718 ttttcattaacacttgccctcagtcccacttttagtccttcactcaacaaaaccgcattcattttctgctcagcaaatagaggccacgtgattaacggca 2007817  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    |||| |||| |||||||||||| ||||||||||| ||||| || ||||||||||||||||||||  ||||||  ||||||||||||||    
2007818 caccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctg 2007905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 2011233 - 2011520
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    ||||||||||||||||||||| ||| ||| |||| | |  ||||| ||||||||||||| |||||| | ||  ||||  |  ||| |||| ||||| |||    
2011233 ttcttttaattccttcatattattgtgcaatttctcacactcttctccttccatgagacgcttgatcaccttagcaacctccaccctttcgacaatacca 2011332  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    || |  |||| | ||||||||||||||||||| || || ||| ||| |||||| |||||| ||| ||| |||||||| | ||||||||||||||||||||    
2011333 ttttcgttaactcttggcctcagtcccactttaaggccctcagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggca 2011432  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    | ||||| | |||||| ||||| |||||  |||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||    
2011433 ccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatttgaatctg 2011520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 1965459 - 1965174
Alignment:
5 cttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgccatt 104  Q
    ||||||| ||||||||||| ||| ||| |||| | |  ||||| |||||||||||||||||||| | ||  ||||  |  ||| |||| ||||| || ||    
1965459 cttttaactccttcatattattgtgcaatttctcacactcttctccttccatgagacacttgatcaccttagcaacctccaccctttcgacaataccgtt 1965360  T
105 ctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcaca 204  Q
     |  |||| | |||| |||||||||||||| || ||  || ||| |||||| |||||| ||| ||| |||||||| | |||||||||||||||||||||     
1965359 ttcgttaactcttggtctcagtcccactttaaggcccccagtcaccaaaactgcattcattccctgttcagcaaacataggccatgtgattagtggcact 1965260  T
205 ccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    ||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||| |||| |||||| |||| |||||||||||||||    
1965259 ccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctg 1965174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 10201811 - 10201912
Alignment:
141 ttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaacca 240  Q
    ||||||||| ||||| |||||| |  | ||||||||| | || |||||||  || |  |||||||||| || |||||||||||| |||||||||||||||    
10201811 ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca 10201910  T
241 ca 242  Q
    ||    
10201911 ca 10201912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 10208884 - 10208985
Alignment:
141 ttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaacca 240  Q
    ||||||||| ||||| |||||| |  | ||||||||| | || |||||||  || |  |||||||||| || |||||||||||| |||||||||||||||    
10208884 ttcactcaataaaacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaacca 10208983  T
241 ca 242  Q
    ||    
10208984 ca 10208985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 5906451 - 5906164
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    |||||| |||||||||||||| ||||||| |||| | | ||||||||||||||||||||||||||| | ||  | ||  | || | ||||||||||||||    
5906451 ttctttcaattccttcatattattgcgcaatttctcacattcttccccttccatgagacacttgatcaccttagaaacctctatcctttccacaatgcca 5906352  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    || | ||||| | ||||||||| |||||| ||||| || ||||||| || ||  |||||| |||||||||||||||| ||||||||||||||||||||||    
5906351 ttttcattaactcttggcctcactcccacctttaggccctcactcagcacaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggca 5906252  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctg 290  Q
    ||||||||| | | ||||||||  ||||| |||||||||| ||| ||||||| |||||||||||  |||||| |||||||| ||||||    
5906251 caccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctg 5906164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 5902967 - 5902696
Alignment:
3 ttcttttaattccttcatatttttgcgcagtttcccgccttcttccccttccatgagacacttgattaactctgcaatttgtaccttttccacaatgcca 102  Q
    ||||||||||||||||||||| |||||||  ||| | | |||||| ||||||||||||| |||||| || |  | |||||   || |||| |||||||||    
5902967 ttcttttaattccttcatattattgcgcaaattctcacattcttctccttccatgagacccttgatcaatttagaaatttcctccctttcaacaatgcca 5902868  T
103 ttctgattaatttttggcctcagtcccacttttagtccttcactcaacaaaaccgcattcgttctctgctcagcaaatagaggccatgtgattagtggca 202  Q
    || | |||||   ||||||||||||||||||| || || ||||||| || ||| |||||| |||| |||||| |||| | ||||||||||||||||||||    
5902867 ttatcattaacccttggcctcagtcccactttaaggccctcactcagcacaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggca 5902768  T
203 caccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgac 274  Q
    ||||||||| ||||||||||||  |||||||||| ||||||||| ||||||| ||||||||||| |||||||    
5902767 caccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgac 5902696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 845007 - 845085
Alignment:
214 acactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    ||||| ||||| ||||||||||||||||| ||||| || |||||||||| |||||| |||| ||| |||| ||| ||||    
845007 acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtg 845085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 870291 - 870369
Alignment:
214 acactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtg 292  Q
    ||||| ||||| ||||||||||||||||| ||||| || |||||||||| |||||| |||| ||| |||| ||| ||||    
870291 acactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtg 870369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University