View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_44 (Length: 283)
Name: NF1690_high_44
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 39531077 - 39530827
Alignment:
| Q |
19 |
aggaccatgctcttgactgaaaaagggaccaattcaaatcactatagttgttgatgctttgtgtaaattcagccattcctattatatgatatgattaagg |
118 |
Q |
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| T |
39531077 |
aggaccatgctcttgactgaaaaagggaccaattcaaatcactatagttgttgatgctttgtgtaaattcagccattcctattatatgatatgattaagg |
39530978 |
T |
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| Q |
119 |
ttatattttagttagttaccaattcatg--nnnnnnnnnaggatggagagtagtactctattcctcatttctacaagactattttgagatttctgtttat |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39530977 |
ttatattttagttagttaccaattcatgttttttttattaggatggagagtagtactctattcctcatttctacaagactattttgagatttctgtttat |
39530878 |
T |
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| Q |
217 |
atttttataagannnnnnnagtattaattgttctgtcttcaaattactctc |
267 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39530877 |
atttttataagatttttttagtattaattgttctgtcttcaaattactctc |
39530827 |
T |
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