View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_high_46 (Length: 279)
Name: NF1690_high_46
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_46 |
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| [»] scaffold0428 (1 HSPs) |
| | |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 548726 - 548989
Alignment:
| Q |
1 |
aaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
548726 |
aaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
548825 |
T |
|
| Q |
101 |
caccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatcatcaagagtagaattaaaattacccttttttgaagat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
548826 |
caccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatcatcaagagtataattaaaattacccttttttgaagat |
548925 |
T |
|
| Q |
201 |
ccactaaaataagcagaacttgagtgcttatttggaactctaataacccacaaaaaattgcaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
548926 |
ccactaaaataagcagaacttgagtgcttatttggaattctaataacccacaaaaaattgcaac |
548989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23423878 - 23423716
Alignment:
| Q |
1 |
aaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423878 |
aaactaaaccctctaaacttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
23423779 |
T |
|
| Q |
101 |
caccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423778 |
caccaagccttgatctttagtcctttccaagaaacctaatggtaaataatttaatggatcatc |
23423716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 23423716 - 23423639
Alignment:
| Q |
187 |
ccttttttgaagatccactaaaataagcagaacttgagtgcttatttggaactctaataacccacaaaaaattgcaac |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23423716 |
ccttttttgaagatccactaaaataagcagaatttgagtgcttatttggaactctaataacccacaaaaaattgcaac |
23423639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 894496 - 894640
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatcttt |
118 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||| | ||||| |||||| ||||||||||| |||||||||||||| ||||| || | ||||| |
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|
| T |
894496 |
ttgaaccccaaccacaatgactcaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttcttt |
894595 |
T |
|
| Q |
119 |
agtcctttccaagaaacctaatggtaaataatttaatggatcatc |
163 |
Q |
| |
|
|| ||||||| ||||| ||||||||||| |||||||||||| |
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|
| T |
894596 |
ggttctttccagaaaaccacttggtaaataatctaatggatcatc |
894640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 906147 - 906003
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatcttt |
118 |
Q |
| |
|
|||||| ||||||||||||| ||||||| |||||| |||| | ||||| |||||| ||||||||||| |||||||||||||| ||||| || | ||||| |
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|
| T |
906147 |
ttgaaccccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttcttt |
906048 |
T |
|
| Q |
119 |
agtcctttccaagaaacctaatggtaaataatttaatggatcatc |
163 |
Q |
| |
|
| |||||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
906047 |
gtttctttccaagaaaccatttggtaaatactctaatggatcatc |
906003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 1963567 - 1963481
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccacca |
105 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||| | ||||| |||||||| |||| || ||||| |||||||||||||| |||| |
|
|
| T |
1963567 |
ttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaacca |
1963481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 566327 - 566377
Alignment:
| Q |
42 |
aaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccat |
92 |
Q |
| |
|
||||| ||| || |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
566327 |
aaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
566377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 2014862 - 2014942
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa |
99 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||| |||||| |||| ||| |||| || ||||| ||||||||||||| |
|
|
| T |
2014862 |
ttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaa |
2014942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 2018245 - 2018325
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa |
99 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||| |||||| |||| ||| |||| || ||||| ||||||||||||| |
|
|
| T |
2018245 |
ttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaa |
2018325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 2436979 - 2436899
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa |
99 |
Q |
| |
|
||||| |||| ||||| ||| |||| ||||||||| ||| || |||||||| |||| ||| ||||| ||||||||||||| |
|
|
| T |
2436979 |
ttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaa |
2436899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 1425 - 1348
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg |
96 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||| | ||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
1425 |
ttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg |
1348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 845020 - 845101
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
845020 |
ttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac |
845101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 870304 - 870385
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaac |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||||||||| |||||| ||||| ||||||| |
|
|
| T |
870304 |
ttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaatttcaatttgtggtgcccaatatggaac |
870385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 33257307 - 33257230
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg |
96 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| |||| | ||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
33257307 |
ttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatg |
33257230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 8294448 - 8294591
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaaccaccaagccttgatcttt |
118 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||| |||| | ||||| |||||| ||||||||||| |||||||||| ||| || | || | ||||| |
|
|
| T |
8294448 |
ttgaactccaaccacaatgacttaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatgcaactactagtccattttcttt |
8294547 |
T |
|
| Q |
119 |
agtcctttccaagaaacctaatggtaaataatttaatggatcat |
162 |
Q |
| |
|
|| |||||||| ||||| ||||||||| | ||||||||||| |
|
|
| T |
8294548 |
tgttctttccaaaaaaccatttggtaaatactctaatggatcat |
8294591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 15200 - 15276
Alignment:
| Q |
20 |
tgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg |
96 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||| ||||||||| |||| ||||||||||| || |||||||||| |
|
|
| T |
15200 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
15276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 57644 - 57568
Alignment:
| Q |
20 |
tgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatg |
96 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||| ||||||||| |||| ||||||||||| || |||||||||| |
|
|
| T |
57644 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
57568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 41511483 - 41511443
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaa |
59 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
41511483 |
ttgaattccaaccacaatgagtcaaaaatccaccaattgaa |
41511443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 5906227 - 5906147
Alignment:
| Q |
19 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccatgatggaa |
99 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||| ||| | |||||||| ||||||| || || ||||||||||||| |
|
|
| T |
5906227 |
ttgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaa |
5906147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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