View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_50 (Length: 261)
Name: NF1690_high_50
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_50 |
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| [»] scaffold0210 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 254
Target Start/End: Original strand, 6849371 - 6849506
Alignment:
| Q |
119 |
tttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgatctatgtatgg |
218 |
Q |
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| T |
6849371 |
tttgtctttggttgtacgggggatattcctaatctaaaactacgtgggagagagagcaatctctcttccgtcaaacatgtaaatattgatttaaatatgg |
6849470 |
T |
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| Q |
219 |
ggtgtattaatgaggatactcctttggttcatctca |
254 |
Q |
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| T |
6849471 |
ggtctattgatgcggatactccttttgttcttctca |
6849506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 6889666 - 6889859
Alignment:
| Q |
18 |
aaaacctctgcatatcaagtgctacacttgccaatttaactttaaa-agtgtatcacc--accaatatggcaaaatcgagttatctactccaagtctttg |
114 |
Q |
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| T |
6889666 |
aaaacctctggatattaagtgctacacttgccaatttaactttagacactggttgggcctacaattatggcaaaatcgagttatctactccaagtctttg |
6889765 |
T |
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| Q |
115 |
cacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgat |
208 |
Q |
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| T |
6889766 |
cacctttgtctttgtttgtatcggaggttttcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgat |
6889859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 6844671 - 6844858
Alignment:
| Q |
18 |
aaaacctctgcatatcaagtgctacacttgccaatttaactttaaaagtgtatcaccaccaatatggcaaaatcgagttatctactccaagtctttgcac |
117 |
Q |
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| T |
6844671 |
aaaacctctgtatatcaagtgctacacttgatgatttaactatagaaa---aacacaataaatatgacaaaattgagttatctactccaagtctttgcac |
6844767 |
T |
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| Q |
118 |
ctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgat |
208 |
Q |
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| T |
6844768 |
ctttgtctttgtttgtgaggggaatattcctgctctgaaactacatgggatagagagaaatctctcttctgtcaaacatgtaaagattgat |
6844858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 6849109 - 6849210
Alignment:
| Q |
18 |
aaaacctctgcatatcaagtgctacacttgccaatttaactttaaaagtgtatcaccaccaatatggcaaaatcgagttatctactccaagtctttgcac |
117 |
Q |
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| T |
6849109 |
aaaacctctgcatatcaagtgctacacttgccaatttaactttaaaa-cgtatcactactaat-cggcataatcgagttatctactccaagtctttgcac |
6849206 |
T |
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| Q |
118 |
cttt |
121 |
Q |
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|||| |
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| T |
6849207 |
cttt |
6849210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 30597694 - 30597579
Alignment:
| Q |
92 |
gagttatctactccaagtctttgcacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatca |
191 |
Q |
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|||||||||||||||||||||| |||||||| ||||| |||| | || |||||||| | ||| |||| || |||| | | ||| || ||||| ||| |
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| T |
30597694 |
gagttatctactccaagtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtca |
30597595 |
T |
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| Q |
192 |
aacatgtaaatattga |
207 |
Q |
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| T |
30597594 |
aacatgtaaatattga |
30597579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 15899 - 15863
Alignment:
| Q |
18 |
aaaacctctgcatatcaagtgctacacttgccaattt |
54 |
Q |
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| T |
15899 |
aaaacctctacatatcaagtgccacacttgccaattt |
15863 |
T |
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