View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_51 (Length: 261)
Name: NF1690_high_51
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 19292101 - 19291859
Alignment:
| Q |
1 |
ccgggcgcgtcaacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19292101 |
ccgggcgcgtcaacataccatcttctttctccctcctgtcggtgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttacattg |
19292002 |
T |
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| Q |
101 |
tgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatag |
200 |
Q |
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| T |
19292001 |
tgcacataacatcctattacaattaggacatattgaattcttaacaacctcggttccatcattgatcaaaagagcgaaacattctggaagaggacaatag |
19291902 |
T |
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| Q |
201 |
aatttatcagaaatattgatcaaagccttgcacattcccttac |
243 |
Q |
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| T |
19291901 |
aatctatacgaaacatctatcaaagccttgcacaatcccttac |
19291859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 19270766 - 19270568
Alignment:
| Q |
4 |
ggcgcgtcaacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgc |
103 |
Q |
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| T |
19270766 |
ggcgcatcaacataacatcttctttcttcctctcgtccgcgttcagcttctcaaactcgctgcattcgattccttcatgccatggaaccttacattttgc |
19270667 |
T |
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| Q |
104 |
acataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaa |
202 |
Q |
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| T |
19270666 |
acaaaacatcctattacaattaggacattctgagtttttaacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaagggacagtagaa |
19270568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 19255051 - 19254857
Alignment:
| Q |
11 |
caacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataac |
110 |
Q |
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| T |
19255051 |
caacataacatcctctttctccctctcgtccgcattcagcgtctcgaactcactgcattcaatcccttcatgccatggaactttacattgtgcacagaac |
19254952 |
T |
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| Q |
111 |
atcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaattt |
205 |
Q |
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| T |
19254951 |
atcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagggacagtagaattt |
19254857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 19314983 - 19314830
Alignment:
| Q |
75 |
ccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagag |
174 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||| || ||||||| | |||||| || | |
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| T |
19314983 |
ccttcatgccatggaactttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtg |
19314884 |
T |
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| Q |
175 |
cgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagcct |
228 |
Q |
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| T |
19314883 |
ctgaacagtctggaaatggacaatagaatttattcgaaacatcgaacaaagcct |
19314830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 19260483 - 19260433
Alignment:
| Q |
97 |
attgtgcacataacatcctattacaattaggacatattgaattcttaacag |
147 |
Q |
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| T |
19260483 |
attgtgcataaaacatcctattacaattaggacattctgaatttttaacag |
19260433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 13206731 - 13206809
Alignment:
| Q |
12 |
aacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaa |
90 |
Q |
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| T |
13206731 |
aacatatcatcttcttcccgcctctcatccgcattcatcttctaaaagtcggtgcattcaatcccttcatgccatggaa |
13206809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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