View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_53 (Length: 258)
Name: NF1690_high_53
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 9076002 - 9076235
Alignment:
| Q |
13 |
aaaatccatgcctcaaaattgaaaacaagttcacaagaataaagtcaagcaatatggattcattgcggttgggatatcaccgcattcacacagacattgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9076002 |
aaaatccatgcctcaaaattgaaaacaagttcacaagaataaagtcaagcaatatggattcattgcggttgggatatcaccgcattcacacagacattgc |
9076101 |
T |
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| Q |
113 |
attgctgacagtaggattcagatcagacagttgacaaaatatgctgatttggattattatttttaaatctaaaatatcaaacttgaaaatcggatcaccc |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9076102 |
attgctgacagtcggattcagatcagacagttgacaaaatatgctgatttggattattatttttaaatctaaaatatcaaacttgaaaatcggatcaccc |
9076201 |
T |
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| Q |
213 |
gatttgggtccaactgtcatcgatgtgctgattg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9076202 |
gatttgggtccaactgtcatcgatgtgctgattg |
9076235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 9084762 - 9084994
Alignment:
| Q |
13 |
aaaatccatgcctcaaaattgaaaacaagttcacaagaataaagtcaagcaatatggattcattgcggttgggatatcaccgcattcacacagacattgc |
112 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9084762 |
aaaatccatgcctcaaaaatcaaaacaagttcacaagaataaagtcaagcaatatggattccttgcggttgggatatcaccgcattcacacagacattgc |
9084861 |
T |
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| Q |
113 |
attgctgacagtaggattcagatcagacagttgacaaaatatgctgatttggattattatttttaaatctaaaatatcaaacttgaaaatcggatcaccc |
212 |
Q |
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|||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||| || || |||||| |||||||||||||||||||||||||||||| |
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| T |
9084862 |
attgctgacagttggattcagatcagacggttcacaaaatatgctgatgtggatt-tttgttctaaatccaaaatatcaaacttgaaaatcggatcaccc |
9084960 |
T |
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| Q |
213 |
gatttgggtccaactgtcatcgatgtgctgattg |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
9084961 |
gatttgggtccaactgtcatcgatgtgctgattg |
9084994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 6415966 - 6416198
Alignment:
| Q |
13 |
aaaatccatgcctcaaaattgaaaacaagttcacaagaataaagtcaagcaatatggattcattgcggttgggatatcaccgcattcacacagacattgc |
112 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6415966 |
aaaatccatgcctcaaaaatcaaaacaagttcacaagaataaagtcaagcaatatggattccttgcggttgggatatcaccgcattcacacagacattgc |
6416065 |
T |
|
| Q |
113 |
attgctgacagtaggattcagatcagacagttgacaaaatatgctgatttggattattatttttaaatctaaaatatcaaacttgaaaatcggatcaccc |
212 |
Q |
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|||||||||||| ||||||||||||||| ||| ||||||||||||||| |||||| || || |||||| |||||||||||||||||||||||||||||| |
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| T |
6416066 |
attgctgacagttggattcagatcagacggttcacaaaatatgctgatgtggatt-tttgttctaaatccaaaatatcaaacttgaaaatcggatcaccc |
6416164 |
T |
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| Q |
213 |
gatttgggtccaactgtcatcgatgtgctgattg |
246 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
6416165 |
gatttgggtccaactgtcatcgatgtgctgattg |
6416198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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