View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_54 (Length: 257)
Name: NF1690_high_54
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_54 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 9264089 - 9263855
Alignment:
| Q |
14 |
gagatgaccggaacggcctgaatccatatgataaataagcctttcccacattctttgaagtgtagtgagccatttttcagctccatattcaaatccaaat |
113 |
Q |
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| T |
9264089 |
gagatgaccggaacggcctgaatccatatgataaataagcctttccaacattctttgaagtgtagtgagccatttttcagctccaaattcaaatccaaat |
9263990 |
T |
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| Q |
114 |
gatagctacctcctttgagattttctagaagcttcgatgtgaatattcggatt--------tgattattagtcctagggaacattgtttcataggtttca |
205 |
Q |
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| T |
9263989 |
gatagctacctccttcgagattttctagaagcttcgatgtgaatattcggattcttttaactgattattagtcctagagaacattgtttcataggtttca |
9263890 |
T |
|
| Q |
206 |
aggttatgagtatctcttccatcaatgtttgattt |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9263889 |
aggttatgagtatctcttccatcaatgtttgattt |
9263855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 9268250 - 9268134
Alignment:
| Q |
131 |
agattttctagaagcttcgatgtgaatattcggatt-------tgattattagtcctagggaacattgtttcataggtttcaaggttatgagtatctctt |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9268250 |
agattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctctt |
9268151 |
T |
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| Q |
224 |
ccatcaatgtttgattt |
240 |
Q |
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| T |
9268150 |
ccatcagtgtttgattt |
9268134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 9276039 - 9275923
Alignment:
| Q |
131 |
agattttctagaagcttcgatgtgaatattcggatt-------tgattattagtcctagggaacattgtttcataggtttcaaggttatgagtatctctt |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9276039 |
agattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctctt |
9275940 |
T |
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| Q |
224 |
ccatcaatgtttgattt |
240 |
Q |
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|||| | |||||||||| |
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| T |
9275939 |
ccattattgtttgattt |
9275923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 9282720 - 9282604
Alignment:
| Q |
131 |
agattttctagaagcttcgatgtgaatattcggatt-------tgattattagtcctagggaacattgtttcataggtttcaaggttatgagtatctctt |
223 |
Q |
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| T |
9282720 |
agattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctctt |
9282621 |
T |
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| Q |
224 |
ccatcaatgtttgattt |
240 |
Q |
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|||| | |||||||||| |
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| T |
9282620 |
ccattattgtttgattt |
9282604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 9293691 - 9293575
Alignment:
| Q |
131 |
agattttctagaagcttcgatgtgaatattcggatt-------tgattattagtcctagggaacattgtttcataggtttcaaggttatgagtatctctt |
223 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9293691 |
agattttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagggaacattgtttcataggtttcaaggttaagagtatctctt |
9293592 |
T |
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| Q |
224 |
ccatcaatgtttgattt |
240 |
Q |
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| T |
9293591 |
ccattattgtttgattt |
9293575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 9223388 - 9223490
Alignment:
| Q |
135 |
tttctagaagcttcgatgtgaatattcggatt-------tgattattagtcctagggaacattgtttcataggtttcaaggttatgagtatctcttccat |
227 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9223388 |
tttctagaagcttcgatgcgaatattcggattctttaactgattattagtcctagagaccattgtttcataggtttcaaggttaagagtatctcttccat |
9223487 |
T |
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| Q |
228 |
caa |
230 |
Q |
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||| |
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| T |
9223488 |
caa |
9223490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 9276855 - 9276810
Alignment:
| Q |
53 |
cctttcccacattctttgaagtgtagtgagccatttttcagctcca |
98 |
Q |
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| T |
9276855 |
cctttcacacattatttgaagtgtagtgagccatttttcagctcca |
9276810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 9294507 - 9294462
Alignment:
| Q |
53 |
cctttcccacattctttgaagtgtagtgagccatttttcagctcca |
98 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
9294507 |
cctttcacacattatttgaagtgtagtgagccatttttcagctcca |
9294462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 2272 - 2227
Alignment:
| Q |
53 |
cctttcccacattctttgaagtgtagtgagccatttttcagctcca |
98 |
Q |
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| T |
2272 |
cctttcacacattatttgaagtgtagtgagccatttttcagctcca |
2227 |
T |
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