View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_56 (Length: 255)
Name: NF1690_high_56
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_56 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 39315353 - 39315113
Alignment:
| Q |
15 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcatt |
114 |
Q |
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| T |
39315353 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcatt |
39315254 |
T |
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| Q |
115 |
gtgacccaatctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctgatac |
214 |
Q |
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| T |
39315253 |
gtgacccaatctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctgatac |
39315154 |
T |
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| Q |
215 |
ctttgtcatcaacataggtgacactttcatggtaagtaaat |
255 |
Q |
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| T |
39315153 |
ctttgtcatcaacataggtgacaccttcatggtaagtaaat |
39315113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 39306352 - 39306184
Alignment:
| Q |
24 |
ttttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgcagtgctaacctcactggtgctcttggcaatggccctcattgtgacccaa |
123 |
Q |
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| T |
39306352 |
ttttttgaagatgcagaaactatgatgaggtgcaactcttacccaccttgcagtggcatccatgcaggtgcccttggcactggtcctcattgtgacccaa |
39306253 |
T |
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| Q |
124 |
tctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttg |
192 |
Q |
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| T |
39306252 |
cctcagtcaccattctttttcaagatcaagttggaggtctagaagcttttgtggataacaaatggcttg |
39306184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 44114095 - 44113859
Alignment:
| Q |
15 |
tatcaaagattttttgaagatgctgagtcaatgatgagatgcaacttttatccaccttgca---gtgctaacctcactggtgctcttggcaatggccctc |
111 |
Q |
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| T |
44114095 |
tatcgaagattttttgaagatggtgactcaataatgagatgtaactattatccaccttgtaaaagttctaatctcaca------cttggtactggccctc |
44114002 |
T |
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| Q |
112 |
attgtgacccaatctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggcttgctgtgcccccaaagcctga |
211 |
Q |
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| T |
44114001 |
actcagacccaacatcactaaccattcttcatcaagatcaagttggaggtcttgaagtttttgcagataataaatgggtggctgttcgccctagacctga |
44113902 |
T |
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| Q |
212 |
tacctttgtcatcaacataggtgacactttcatggtaagtaaa |
254 |
Q |
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| T |
44113901 |
agccctagtcattaacataggtgacactttcatggtatgtaaa |
44113859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 40553797 - 40553881
Alignment:
| Q |
105 |
ggccctcattgtgacccaatctctatcactattctccttcaagatcaagttggaggtcttgaagtttttgctgacaacaaatggc |
189 |
Q |
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| T |
40553797 |
ggccctcattgtgatccaacctcaataacactacttcatcaagatcaagttggaggtcttcaagtttttgttgacaacaagtggc |
40553881 |
T |
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