View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_6 (Length: 581)
Name: NF1690_high_6
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 524
Target Start/End: Complemental strand, 37244659 - 37244115
Alignment:
| Q |
7 |
tcgaataatataatcttcgtctggttcctcacaatttaacaaatttcttattggtggtctgagcgagggtgttgtgtggcttgcgttttcttgtatcata |
106 |
Q |
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| T |
37244659 |
tcgaataatataatcttcgtctggttcctcacaatttaacaaatttctcattggtggtctgagcgagggtgttgtgtggcttgcgttttcttgtatcata |
37244560 |
T |
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| Q |
107 |
cttttcctgtacaagtccaatagatgcatacatttccccaaccttatgattttcttcttgaacaaggatgtattctcaatgattccggatggccatgggt |
206 |
Q |
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| T |
37244559 |
cttttcctgtacaagtccaatagatgcgtacatttccccaaccttatgatttttgtcttgaacaaggatgtattcttaatgattcgggatggccatgggt |
37244460 |
T |
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| Q |
207 |
caagaaattttatgattttcttgtttaacgactcacgatgatcttcctgt----------------------atcagaatgatatcaaccaacacttcta |
284 |
Q |
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| T |
37244459 |
caagaaattttatgattttctcctttaacgactcacgatgatcttcctgtatgttgcatatcaaattgcagcattagaataatatcaaccaacacttcta |
37244360 |
T |
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| Q |
285 |
tatagctataaacatcattgaataggaaaaataatggtatttgttatttattgaaatttgaatggtccttgatgagtataaaaattcaaaggaaaatttg |
384 |
Q |
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| T |
37244359 |
tatagccataaacatcattgaataggaaaaataatggtatttgttatttattgaaatttgaatggtccttcatgagtataaaaattcaaaggaaaatttg |
37244260 |
T |
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| Q |
385 |
atgagtataa------tgcttcaagtgtttgaataaactgttgaaacgagggtagatgggtaactagagggaggcttgaaaatctcacctacgaagaatg |
478 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
37244259 |
-tgtgtcaaaggggtatgcttcaagtggttgaataaactgttgaaacgagggtagacgggtaactaaagggaggcttgaaaatctcacctacgaaaaatg |
37244161 |
T |
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| Q |
479 |
aagaccatcttttgatacgatgaaatcatcaaaatgtactttactc |
524 |
Q |
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| T |
37244160 |
aagaccatcttttgatacgatgaaatcatcaaaatgtactttactc |
37244115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 37965258 - 37965184
Alignment:
| Q |
73 |
gggtgttgtgtggcttgcgttttcttgtatcatacttttcctgtacaagtccaatagatgcatacatttccccaa |
147 |
Q |
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|||||||| |||||||| | ||||||||||| ||||| || |||| |||||||| |||||| ||||||||||| |
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| T |
37965258 |
gggtgttgggtggcttggttcttcttgtatcactctttttctatacacgtccaatacatgcatgcatttccccaa |
37965184 |
T |
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