View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_69 (Length: 242)
Name: NF1690_high_69
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_69 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6448013 - 6448237
Alignment:
| Q |
1 |
tgattccttgctttcttttttgtcgtttatttgatactcaaagtgtagcttagataaactttgctattgctatttgctaagggaaaaggtgataactcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6448013 |
tgattccttgctttcttttttgtcgtttatttgatactcaaagtgtagcttagataaactttgctattgctatttgctaagggaaaaggtgataactcta |
6448112 |
T |
|
| Q |
101 |
atttcaaagcaacacatgcttgtagtatggctgtattctgatctcaccaataacaactacgaagctaatattcttcttcttcattactaatagacaatat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6448113 |
atttcaaagcaacacatgcttgtagtatggctgtattctgatctcaccaataacaactacgaagctaatattcttcttcttcattactaatagacaatat |
6448212 |
T |
|
| Q |
201 |
tttctcttaattattaccaccatca |
225 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
6448213 |
ttcctcttaattattaccaccatca |
6448237 |
T |
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