View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_7 (Length: 577)
Name: NF1690_high_7
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 6973901 - 6973334
Alignment:
| Q |
1 |
tagtgggggcaactggggtgaagtcttctcttttcctttttaatttaaaaataataaataaattcaaggcctattatatactgttnnnnnnnggttggcc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6973901 |
tagtgggggcaactggagtgaagtcttctcttttcctttttaatttaaaaataataaataaattcaaggcctattatatactgttaaaaaaaggttggcc |
6973802 |
T |
|
| Q |
101 |
tttaagatgggtcaactatatggtgcatgcccgtggatgacaaacgcctaactatattaaatacagaactcttatatgaaatttgtctggttaaacgtta |
200 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6973801 |
tttaagatgggtcaactatatgctgcatgcccatggatgacaaacgcctaactatattaaatacagagctcttatatgaaatttgtctggttaaacgtta |
6973702 |
T |
|
| Q |
201 |
ttctataatataataaatgttcaaatagttggataattcagttaatctttgatacggtgagattaaattacaaagttcgatctaataataacctacttca |
300 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6973701 |
ttctata--ataataaatgttcaaatagtcggataattcagttaatctttgatacggtgagattaaattacaaagttcgatctaataataacctacttca |
6973604 |
T |
|
| Q |
301 |
ctatcattcc--nnnnnnnntatatgcatcaagaagaacacatgagatgttcttatttgtttagagattctcacaaaatcacattctaacaaaagatact |
398 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6973603 |
ctatcattccaaaaaaaaaaaatatgcatcaagaagaacacatgagatgttcttttttgtttagagattctcacaaaatcacattctaacaaaagatact |
6973504 |
T |
|
| Q |
399 |
tcacttatatgttggattcatgaccaaaatttccgtttatatattggtaggtgtagtgttgaagaaaatttaaatcgctacttctttggtctgcaattac |
498 |
Q |
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| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6973503 |
ttacttatatgtcggattcaagaccaaaatttccatttatatattggtaggtgtagtgttgaagaaaatttaaatcgctatttatttggtctgcaattac |
6973404 |
T |
|
| Q |
499 |
aatttggttaggtgtt-------ctctttcaaataacacatctgttaattttaaccaattatgtggtata |
561 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6973403 |
gatttggttaggtgtttctcgcgctctttcaaataacacatctgttaatttcgaccaattatgtggtata |
6973334 |
T |
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