View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_74 (Length: 235)
Name: NF1690_high_74
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_74 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 23423475 - 23423255
Alignment:
| Q |
3 |
tcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatgatgacaccatctaccaaagagagt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423475 |
tcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatgatgacaccatctaccaaagagagt |
23423376 |
T |
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| Q |
103 |
ctttggcacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaatctg |
202 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23423375 |
ctttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaaactg |
23423276 |
T |
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| Q |
203 |
gaatgtcaaatgtttttgttg |
223 |
Q |
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||||||||||||||||||||| |
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| T |
23423275 |
gaatgtcaaatgtttttgttg |
23423255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 549153 - 549373
Alignment:
| Q |
3 |
tcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatgatgacaccatctaccaaagagagt |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549153 |
tcccacagggtaaacacaaatgatatcttgtatagattttattgcatcatgttccaaataagtgaagctattgatgatgacaccatctaccaaagagagt |
549252 |
T |
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| Q |
103 |
ctttggcacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaatctg |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
549253 |
atttgacacgcacaaagaaatgctttgtatgtttcacttgatcttccaaaaagaacagggtcaggaaaatcatttaccttaaaagaaacatttgaaactg |
549352 |
T |
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| Q |
203 |
gaatgtcaaatgtttttgttg |
223 |
Q |
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||||||||||||||||||||| |
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| T |
549353 |
gaatgtcaaatgtttttgttg |
549373 |
T |
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