View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_76 (Length: 235)
Name: NF1690_high_76
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_76 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 13796167 - 13795948
Alignment:
| Q |
1 |
ttaaaagataaatcaagtcatttgactgtatccatatttgtttgacaatcaataaaatacatgatataattgtctcacattattattttgnnnnnnnnnn |
100 |
Q |
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| T |
13796167 |
ttaaaagataaatcaagtcatttgactgtatccatatttgtttgacaatcaataaaatacatgatataattgtctcacattattattttgaaaataaaaa |
13796068 |
T |
|
| Q |
101 |
nnnnnnnnntgtacatttcattaaataccaaactcatgacattccttattttggttcaagaggccacgtgtcatatgagaaaaacattatcatatatgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13796067 |
taaaataattgtacatttcattaaataccaaactcatgacattccttagtttggttcaagaggccacgtgtcatatgagaaaaacattatcatatatgtc |
13795968 |
T |
|
| Q |
201 |
tttgagaaaaaccttcaaat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13795967 |
tttgagaaaaaccttcaaat |
13795948 |
T |
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