View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_high_79 (Length: 228)
Name: NF1690_high_79
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_79 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 228
Target Start/End: Original strand, 25867682 - 25867879
Alignment:
| Q |
33 |
gtaactaatgttttgttgaaaatctaaaaggtgagacaaatttttgttggaaaaagatcaattattttggnnnnnnnnn-tacannnnnnn-gtggttat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
25867682 |
gtaactaatgttttgttgaaaatctaaaaggtgagacaaatttttgttggaaaaagatcaattattttggaacaaagaaatacattttttttgtggttat |
25867781 |
T |
|
| Q |
131 |
aataaactttnnnnnnnttatgaatccgaggaaagcatgatagttatgaatattgtaagtgaagaacagcacaaaaagcatctaagaaaatcaacaaa |
228 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25867782 |
aacaaactttaaaaaaattatgaatccgaggaaagcaggatagttatgaatattgtaagtgaagaacagcataaaaagcatctaagaaaatcaacaaa |
25867879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University