View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_high_8 (Length: 551)
Name: NF1690_high_8
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 46935160 - 46934616
Alignment:
| Q |
1 |
ctgacagagacggaccaacagaaagaatgttgtacaaaactaaggacaaatttaatcttgaatacaagaatttaaatattgatggttaaattcaagaaat |
100 |
Q |
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| T |
46935160 |
ctgacagagacggaccaacagaaagaatgttgtacaaaactaaggacaaatttaatcttgactacaagaatttaaatattgatggttaaattcaagaaat |
46935061 |
T |
|
| Q |
101 |
tggtttcttttcagtgaaaaattaagatactttatctgcaaaaactaaatatatggaaaggacttcttaattttaaatattacaacaggattccttatca |
200 |
Q |
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| T |
46935060 |
tgttttcttttcagtgaaaaattaagatactttatctgcaaaaactaaatatatggaaaggacttcttaattttaaatattacaacaggattccttatca |
46934961 |
T |
|
| Q |
201 |
tgcatgattacaataacannnnnnnactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcagtaaca |
300 |
Q |
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| T |
46934960 |
tgcatgattacaataacatttttttactgataacgaatataacttttatttatgtttatcgacaatgttgtactgtatgaagaagtttatagcggtaaca |
46934861 |
T |
|
| Q |
301 |
tttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaag |
400 |
Q |
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| T |
46934860 |
tttgtcacatgaatacaattattttgactcaattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaag |
46934761 |
T |
|
| Q |
401 |
aaaaaggactatctaatgtattagacatacaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaa |
500 |
Q |
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| T |
46934760 |
aaaaaggactatctaatgtattagacatgcaaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaa |
46934661 |
T |
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| Q |
501 |
tgccgaatttatcattcatgtccatatcttctggtttcatctcac |
545 |
Q |
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| T |
46934660 |
tgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 463 - 540
Target Start/End: Original strand, 11106244 - 11106321
Alignment:
| Q |
463 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcat |
540 |
Q |
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|||||||| |||||||||||| |||||||| | ||||| || |||||||||| ||||| |||||||||||||||||| |
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| T |
11106244 |
aggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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