View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_high_81 (Length: 226)

Name: NF1690_high_81
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_high_81
NF1690_high_81
[»] chr8 (10 HSPs)
chr8 (30-216)||(25717129-25717315)
chr8 (32-216)||(25393228-25393412)
chr8 (30-216)||(25653240-25653426)
chr8 (53-216)||(25454918-25455081)
chr8 (46-216)||(25606573-25606743)
chr8 (46-216)||(25807185-25807355)
chr8 (30-216)||(25697296-25697482)
chr8 (45-216)||(25342916-25343087)
chr8 (30-216)||(25324592-25324780)
chr8 (52-175)||(24872517-24872640)
[»] scaffold1415 (1 HSPs)
scaffold1415 (30-216)||(972-1158)
[»] scaffold0070 (3 HSPs)
scaffold0070 (30-216)||(35022-35208)
scaffold0070 (46-216)||(14995-15165)
scaffold0070 (132-216)||(48588-48672)
[»] chr4 (1 HSPs)
chr4 (50-106)||(10325890-10325946)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25717315 - 25717129
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||    
T  25717315 acttgaggtgttatacttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcactcatttgggggttgatcagaat 25717216  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| || |||||    
T  25717215 agcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcaatatctatacttgaatcataacaattttgttgga 25717129  T

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Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 32 - 216
Target Start/End: Complemental strand, 25393412 - 25393228
Alignment:
Q  32 ttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatag 131  Q
    |||||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| || ||||| |||||||| ||||||    
T  25393412 ttgaggtgttatacttgcctaacaatagcttaagtggatctatttcttccaaaatcttcaacttgtcatcactcactgatttggaggttgatctgaatag 25393313  T
Q  132 cctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||    
T  25393312 cctctcaggcacaattccatcaaatacgggatatagccttcctagtctgcaatatctatacttgaatgataacaattttgttgga 25393228  T

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Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25653426 - 25653240
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| ||  ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||| | |||||||||||||    
T  25653426 acttgaggtgctaggcttgtataacaatagcttaagtggatctattccttccaaaatcttcaacatgtcatcactcattgatttcgaggttgatcagaat 25653327  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||| || |||||    
T  25653326 agcctctcaggcacaattccatcaaatacgggatatagccttcctaatctgcaatatttactcttgaatgataacaattttgttgga 25653240  T

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Target: chr8; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 25455081 - 25454918
Alignment:
Q  53 acaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacacttccatc 152  Q
    ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||  | |||||||||||||||||| |||||||    
T  25455081 acaataggttaagtggatctattccttccaaaatcttcaacttgtcatcactcactgctttggtggttgaaaataatagcctctcaggcacaattccatc 25454982  T
Q  153 aaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| || |||||    
T  25454981 aaatacgggatatagccttcctagtctgcaatatctattcttgaatgataacaattttgttgga 25454918  T

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Target: chr8; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 25606743 - 25606573
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||| ||||||||| ||||||| ||||||||||||||| ||||| ||| |||||||||||| |||||| | ||||||||| ||||| ||||||||| |||    
T  25606743 ttgtttaacaataggttaagtggatctattccttccaaaatcttgaacatgtcatcactcactgctttagtggttgatcataatagtctctcaggcccac 25606644  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||    
T  25606643 ttccatcaaatacgggatatagccttcctagtttgcaatatctatacttgaatgaaaacaattttgttgga 25606573  T

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Target: chr8; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 46 - 216
Target Start/End: Complemental strand, 25807355 - 25807185
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    ||||| ||||||  | ||||||||||||||||||     
T  25807355 ttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacacatttggaggttgaaaataatagcctctcaggcacaa 25807256  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| || |||||    
T  25807255 ttccatcaaatacgggatatagccttcctagtctgcaatatctacacttgaatgataacaattttgttgga 25807185  T

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Target: chr8; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25697482 - 25697296
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| |||  |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    ||||| ||||||||  |||    
T  25697482 acttgaggtgctatcattgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacatatttggaggttgatcgtaat 25697383  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||| || |||||    
T  25697382 agcctctcaagcacaattccatcaaatacgggatatagccttcctaacctgcaatatctacacttgtatcaaaacaattttgttgga 25697296  T

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Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 25343087 - 25342916
Alignment:
Q  45 cttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcaca 144  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |  ||||| ||||||  ||||||||||||||||||||    
T  25343087 cttgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcacttatttggaggttgaagagaatagcctctcaggcaca 25342988  T
Q  145 cttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
     ||||||||||||||||||||||||||||||  |||||| ||||| |||||||| | |||||| || |||||    
T  25342987 attccatcaaatacgggatatagccttcctagcctgcaacatctacacttgaataataacaattttgttgga 25342916  T

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Target: chr8; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 25324780 - 25324592
Alignment:
Q  30 acttgaggtgttatacttgtata--acaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcaga 127  Q
    |||||||||||||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |    ||||     ||| || |    
T  25324780 acttgaggtgttatacttgtatataacaatagcttaagtggatctattccttccaaaatcttcaacatgtcatcacttacatatttgtatcctgaccaaa 25324681  T
Q  128 atagcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||  |||||| || | | |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| || |||||    
T  25324680 atcacctctctgggataattccttcaaatacgggatatagccttcctaacctgcaatatctattcttgaatgataacaattttgttgga 25324592  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 24872517 - 24872640
Alignment:
Q  52 aacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacacttccat 151  Q
    ||||||||||| | || |||||| |||||||| ||||||||| |||||||||| || |  |||    |||| || |||  |||||| || | | ||||||    
T  24872517 aacaatagctttactggatctataccttccaaaatcttcaacatgtcatcactgataggcttgtatcttgaacaaaatcacctctccgggataattccat 24872616  T
Q  152 caaatacgggatatagccttccta 175  Q
    ||||||||||||||| ||||||||    
T  24872617 caaatacgggatataaccttccta 24872640  T

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Target: scaffold1415 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold1415
Description:

Target: scaffold1415; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 1158 - 972
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||| ||||||||    
T  1158 acttgagctgttatacttgtataacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcactcactgatttggaggttaatcagaat 1059  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||| || |||||||| || |||||    
T  1058 agcctctcaggcacacttccatcaaatacgggatatagccttcctaacctgcataatctacacttgtatcaaaacaattttgttgga 972  T

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Target: scaffold0070 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 35022 - 35208
Alignment:
Q  30 acttgaggtgttatacttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaat 129  Q
    |||||||||| |||  |||| ||||||||||||||||| |||||||||||| || |||||||||||||||||||||| |||||||| ||||||||| |||    
T  35022 acttgaggtgctattattgtctaacaatagcttaagtggatctattccttctaaaatcttcaacttgtcatcactcactgctttggtggttgatcataat 35121  T
Q  130 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||| || |||||    
T  35122 agcctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctacacttgtttcaaaacaattttgttgga 35208  T

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Target: scaffold0070; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 46 - 216
Target Start/End: Original strand, 14995 - 15165
Alignment:
Q  46 ttgtataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactcattgctttgggggttgatcagaatagcctctcaggcacac 145  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |  ||||| ||||||||||||||| ||||||||||||     
T  14995 ttgtctaacaatagcttaagtggatctattccttccaaaatcttcaacttgtcatcgctcactaatttggaggttgatcagaatagtctctcaggcacaa 15094  T
Q  146 ttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||| || | |||||| || |||||    
T  15095 ttccatcaaatacgggatatagccttcctagtctgcaatatctattcttggatcataacaattttgttgga 15165  T

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Target: scaffold0070; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 48588 - 48672
Alignment:
Q  132 cctctcaggcacacttccatcaaatacgggatatagccttcctaatctgcaatatctatacttgaatgaaaacaatattcttgga 216  Q
    ||||||||||| | |||||||||| || || |||||||||||||| || ||||||||| ||||| | | ||||||| || |||||    
T  48588 cctctcaggcataattccatcaaaaacaggttatagccttcctaagctacaatatctagacttggaaggaaacaattttgttgga 48672  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 10325946 - 10325890
Alignment:
Q  50 ataacaatagcttaagtgcatctattccttccaatatcttcaacttgtcatcactca 106  Q
    ||||||||||||| |||| | | ||||||||||| ||||| ||| ||||||||||||    
T  10325946 ataacaatagctttagtggagccattccttccaaaatctttaacatgtcatcactca 10325890  T

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