View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_high_9 (Length: 509)
Name: NF1690_high_9
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_high_9 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 25)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 304 - 494
Target Start/End: Complemental strand, 10216438 - 10216249
Alignment:
| Q |
304 |
tgttatttatctgcgtatcctgaacccatccttcaccattctatcatcaccatctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagt |
403 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216438 |
tgttatttatctgcttatcctgaacccatccttcaccattctatcatcaccatctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagt |
10216339 |
T |
|
| Q |
404 |
ctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatcaaaattgctctgtg |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10216338 |
ctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatc-aaattgctctgtg |
10216249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 11048704 - 11048419
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||| |
|
|
| T |
11048704 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagtaatgttcttcttaacgacgacatggttgctcatgtga |
11048605 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
||||||||||||| |||| | |||||||| ||| | ||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
11048604 |
gtgattttggcattgcaaaacttgtctcagccaccgatgg------------caatactagtacaattggaataaaaggaaccattggctacgctcctcc |
11048517 |
T |
|
| Q |
201 |
aggtatg-------ttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattaccattgacatagtat |
291 |
Q |
| |
|
|||| || |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11048516 |
aggtctgttctaatttctaaatgcttaaatcttccactgtttctttgaattctcctatgttttggtgaatacttaacatattaccattgacatagtat |
11048419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 10216796 - 10216648
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216796 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
10216697 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216696 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctca |
10216648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 10604914 - 10605190
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||| || || ||||||| |||||||||||||||| |
|
|
| T |
10604914 |
gcattgcattatcttcatcaagaatgtgagcaattagtcattcattgtgatctaaagccaagcaatgtcctacttgatgatgatatggttgctcatgtga |
10605013 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | | ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| || ||||||| |
|
|
| T |
10605014 |
gtgattttggcatagcaagactggtctcgtccattggtggtacctctcatataaatactagtacaattgggataaaaggaactgttggatatgctcctcc |
10605113 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattac |
277 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||| |||||| || | || ||||| ||||||||||| |||| |
|
|
| T |
10605114 |
aggtatgttctaaattcttgaatcttcagttgtttctttcaattctactctattctggtgcatacttaatattttac |
10605190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 10611872 - 10612174
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||||| | ||||||||||| |||||||||||||||| || || ||||||| |||||||| ||||||| |
|
|
| T |
10611872 |
gcattacattatcttcataatgaatgtgagcaattggtccttcattgtgatataaagccaagcaatgtcctacttgatgatgatatggttgcacatgtga |
10611971 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||| |
|
|
| T |
10611972 |
gtgattttggcatagcaagacttgtctcggccattggtggttcctctcataagaatactaagacaattggaattaaagggactgttggctatgctcctcc |
10612071 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattaccattgacatagtattaatagctt |
300 |
Q |
| |
|
||||||||||||||| | || | ||| || ||||||||||||| ||||||||||| ||| | ||||||| | |||| | || ||| ||||||||||||| |
|
|
| T |
10612072 |
aggtatgttctaaattcatgaacctttgatcgtttctttgaattttcctatgtttttgtgtaaacttaatgttttactagtggcattgtattaatagctt |
10612171 |
T |
|
| Q |
301 |
ttg |
303 |
Q |
| |
|
||| |
|
|
| T |
10612172 |
ttg |
10612174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 10740746 - 10740487
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10740746 |
gcattacattatcttcaccaagaatgtgaacaattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
10740647 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||| | ||||||||| ||| | |||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10740646 |
gtgattttggcatagcaagacttgtctcagccattgacgatacctctcacaaggaaactagtacaattggaataaaaggaactgttggctatgctcctcc |
10740547 |
T |
|
| Q |
201 |
agg----tatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgtttt |
256 |
Q |
| |
|
||| |||||||||||| | || || | ||||||||||||| ||| ||| |||||||| |
|
|
| T |
10740546 |
aggtatatatgttctaaattcatgaatatcccattgtttctttaaatcctcgtatgtttt |
10740487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 180 - 304
Target Start/End: Complemental strand, 10216648 - 10216524
Alignment:
| Q |
180 |
aaccgttggctacactcctccaggtatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattacca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10216648 |
aaccgttggctacactcctccaggtatgttctaaatgcttaaatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattacca |
10216549 |
T |
|
| Q |
280 |
ttgacatagtattaatagcttttgt |
304 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10216548 |
ttgacatagtattaatagcttttgt |
10216524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 10747061 - 10746768
Alignment:
| Q |
2 |
cattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgag |
101 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| | ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10747061 |
cattacattatcttcaccaagaatgtgagcaattagtcattcactgtgatctcaagccaagcaatgtccttcttgatgatgacatggttgctcatgtgac |
10746962 |
T |
|
| Q |
102 |
tgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcca |
201 |
Q |
| |
|
||||||||||||||||| | |||||||| ||| | |||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
10746961 |
tgattttggcatagcaaaacttgtctcagccactagtgg------------caatactagtacaattggaataaaaggaactgttggctatgctcctcca |
10746874 |
T |
|
| Q |
202 |
gg----tatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttggtgaatacttaatatattaccattgacatagtattaatag |
297 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| | | ||||||| ||| | ||||| |||||||||| |
|
|
| T |
10746873 |
ggtatatatgttctaaattcttgagtcttccattgtttctttgaatactcctatgttttggtttagatttaatattatactagggacatcgtattaatag |
10746774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 10763180 - 10762921
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10763180 |
gcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
10763081 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaa-ccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctc |
199 |
Q |
| |
|
|||||||||| ||||||| | | || |||| |||||| | ||||||||| |||| | |||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
10763080 |
gtgattttggaatagcaagactagt-tcaagccattgcttgtacctctcttaaggaaactagtacaactggaataaaaggaactgttggctatgctcctc |
10762982 |
T |
|
| Q |
200 |
cagg----tatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgtttt |
256 |
Q |
| |
|
|||| |||||||| ||| |||| ||| ||||| ||||||||||| ||| |||||||| |
|
|
| T |
10762981 |
caggtatatatgttctgaattcttgagtctcccattatttctttgaatcctcgtatgtttt |
10762921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10565189 - 10565416
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||| | ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
10565189 |
gcattacattatcttcatagagaatgtgaagaattggtcattcattgtgatctaaagccaagcaatatccttcttgacgatgacatggttgctcatgtga |
10565288 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | | |||||| | ||||| |||||||| |||| ||||| |||||||||| | | |||||||| || ||||| ||||||| |
|
|
| T |
10565289 |
gtgattttggcatagcaagactcgtctcagctattggcagtacctcttataaaaatacaagtacaattgaagttaaaggaacagtaggctattctcctcc |
10565388 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttcc |
228 |
Q |
| |
|
|||||||| |||||||||| ||||||| |
|
|
| T |
10565389 |
tggtatgttttaaatgcttgaatcttcc |
10565416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 356 - 494
Target Start/End: Complemental strand, 10210593 - 10210455
Alignment:
| Q |
356 |
tctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaaggaatggtggctaagggaatatgcatcacaaggtcca |
455 |
Q |
| |
|
|||||||||||||| ||| | |||||||||| | || |||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10210593 |
tctttgtctcctaaagatatatccagtgaaaggctgcagatgttgagtcagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtcca |
10210494 |
T |
|
| Q |
456 |
ggagtttcatacagccagatgtatcaaaattgctctgtg |
494 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
10210493 |
ggagtttcatacaactagatgtatcaaaattgctctgtg |
10210455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 10660130 - 10659921
Alignment:
| Q |
3 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagt |
102 |
Q |
| |
|
||||||||| || ||||| |||||||||||| | | ||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
10660130 |
attacattaccttcatcacgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgacgatgacatggttgctcatgtgagt |
10660031 |
T |
|
| Q |
103 |
gattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctccag |
202 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| | ||||||||| ||| | ||||||||||||||| ||||| || |||||||| ||||||||| |
|
|
| T |
10660030 |
gattttggcatagcaagacttgtctcagccattgacgatacctctcacaaggaatttagtacaattggaattaaagggactgttggctatgctcctccag |
10659931 |
T |
|
| Q |
203 |
gtatgttcta |
212 |
Q |
| |
|
|||| ||||| |
|
|
| T |
10659930 |
gtattttcta |
10659921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 10652247 - 10652045
Alignment:
| Q |
3 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagt |
102 |
Q |
| |
|
||||||||| || ||||| |||||||||||| | | ||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
10652247 |
attacattaccttcatcatgaatgtgagcaagcggtcattcattgtgatctaaagccaagtaatgtccttcttgatgacgacatggttgctcatgtgagt |
10652148 |
T |
|
| Q |
103 |
gattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctccag |
202 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||| ||||||| | ||| | ||||||||||||||||| ||||| || |||||||| ||||||||| |
|
|
| T |
10652147 |
gattttggcatagcaagacttgtctcagccattgacaatacctctaacaaggaaactagtacaattggaattaaagggactgttggctatgctcctccag |
10652048 |
T |
|
| Q |
203 |
gta |
205 |
Q |
| |
|
||| |
|
|
| T |
10652047 |
gta |
10652045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 10581165 - 10581414
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
10581165 |
gcattacattatcttcatcgagaatgtgagcaattggtccttcgttgtgatctaaagccaagcacacttcttg---atgatgacatggt----catgtga |
10581257 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||| ||||| | |||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
10581258 |
gtgattttggcacagcaagacttgtctcagccatttgtggtaccactcataagaatactagtacaactggaataaaaggaacaattggctatgctcctct |
10581357 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttg |
257 |
Q |
| |
|
|||||||| ||||| ||| ||||||| |||| ||||||| || ||||||||| |
|
|
| T |
10581358 |
gggtatgttttaaattattgatacttccatcgtttatttgaatcctaatatgttttg |
10581414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 10716987 - 10716782
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| || |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10716987 |
gcattacattatcttcaccaagaatgtgaacaattaatcattcattgtgatcttaagccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
10716888 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||| ||||||| ||||| |||| |||||| ||||||||||||| | | ||||||| |||| || |
|
|
| T |
10716887 |
ctgattttggcatagcaaaacttgtctcggatattggcattacctctgataaggataccagtacagttggaataaaagggagcattggctatgctccccc |
10716788 |
T |
|
| Q |
201 |
aggtat |
206 |
Q |
| |
|
|||||| |
|
|
| T |
10716787 |
aggtat |
10716782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 7193169 - 7193372
Alignment:
| Q |
3 |
attacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagt |
102 |
Q |
| |
|
||||||||| || |||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
7193169 |
attacattaccttcatcttgaatgtgagcaatcgatcattcattgtgatctaaagccaagcaatgtccttcttgacgatgacatggttgctcatgtgagt |
7193268 |
T |
|
| Q |
103 |
gattttggcatagcaacatttgtctcaaccattggtggtacctctcat-aagaatactagtacaattggaataaaaggaaccgttggctacactcctcca |
201 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| | ||||||||| |||| ||||||||||||||||| ||||| || ||||||| |||||||| |
|
|
| T |
7193269 |
gattttggcatagcaagacttgtctcagttattgacgacacctctcatcgagaa-actagtacaattggaattaaagggactattggctatgctcctcca |
7193367 |
T |
|
| Q |
202 |
ggtat |
206 |
Q |
| |
|
||||| |
|
|
| T |
7193368 |
ggtat |
7193372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10559064 - 10559271
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||||||||| ||| | |||| |||| ||||||||||||| |
|
|
| T |
10559064 |
gcattacattatcttcatcgagaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgatgaagacaatgttgctcatgtga |
10559163 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | | |||||| | | |||| |||| |||| | ||||| ||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
10559164 |
gtgattttggcatagcaagactcgtctcatctgcggacggtatatctcctaaggaaactagcacaattggaataaaagggactgttggctatgctcctcc |
10559263 |
T |
|
| Q |
201 |
aggtatgt |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
10559264 |
aggtatgt |
10559271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 10588473 - 10588273
Alignment:
| Q |
5 |
tacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtga |
104 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || | ||||||||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||| |
|
|
| T |
10588473 |
tacattatcttcatcatgaatgtgagcaggtggtccttcattgtgatataaagccaagcaacgtccttcttgacgatgacatggttgctcatgtgagtga |
10588374 |
T |
|
| Q |
105 |
ttttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctccaggt |
204 |
Q |
| |
|
|||||||||||||| | |||||||| |||| | || |||||| || | ||||||||||||||||| ||||| || |||||||| ||||||||||| |
|
|
| T |
10588373 |
ttttggcatagcaagacttgtctcagttattgaagacacatctcatcaggaaactagtacaattggaattaaagggactgttggctatgctcctccaggt |
10588274 |
T |
|
| Q |
205 |
a |
205 |
Q |
| |
|
| |
|
|
| T |
10588273 |
a |
10588273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 9836375 - 9836210
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| || | |||||||||||| | ||||||||||| | ||||| ||||| ||||||||||||| |||| |
|
|
| T |
9836375 |
gcattacattatcttcattgtgaatgtgagcaagtggtcattcattgtgatatcaagccaagcaacatccttctcgatgataacatggttgctcacgtga |
9836276 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaa |
166 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||||| ||||||||||||||| | |||||||||| |
|
|
| T |
9836275 |
gtgattttggcatagcaagacttatctcagccattgacggtacctctcataaggaaactagtacaa |
9836210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 304 - 452
Target Start/End: Original strand, 10108510 - 10108665
Alignment:
| Q |
304 |
tgttatttatctgcgtatcctgaacccatccttcaccattctatcatc------accatctttgtctcctaatgatttttccagtgaaatgttgaagatg |
397 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||| |||| | |||| ||| |||||||||||||| ||| |||||||||||| | || ||||| |
|
|
| T |
10108510 |
tgttatttatctgcttttcctgaacccattcttcacgattccaccatcgccgacaccgtctttgtctcctaaagatatttccagtgaaaggctgcagatg |
10108609 |
T |
|
| Q |
398 |
ttgagtctgaaagatattaaa-ggaatggtggctaagggaatatgcatcacaaggt |
452 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10108610 |
ttgagtcagagagatattaaaaggaatggtggctaagggaatatgcatcacaaggt |
10108665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 19605912 - 19605795
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||| | | || || || ||||| ||||||| |
|
|
| T |
19605912 |
gcattacattaccttcatcatgaatgtgagcaattggtccttcattgtgatctaaagccaagcaatgtccttattgacgacgatatcgttgcacatgtga |
19605813 |
T |
|
| Q |
101 |
gtgattttggcatagcaa |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19605812 |
gtgattttggcatagcaa |
19605795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 10582307 - 10582450
Alignment:
| Q |
158 |
ctagtacaattggaataaaaggaaccgttggctacactcctccaggtatgttctaaatgcttgcatcttccattgtttctttgaattctcctatgttttg |
257 |
Q |
| |
|
||||||||||||| | ||||||||| |||||||| ||| || || || || ||||| |||| |||||||||||||||||| ||| ||||||| |||| |
|
|
| T |
10582307 |
ctagtacaattgggacaaaaggaacagttggctatgctcttctagatacgtactaaagtcttgaatcttccattgtttcttttaataatcctatg-tttg |
10582405 |
T |
|
| Q |
258 |
gtgaatacttaatatattaccattgacatagtattaatagctttt |
302 |
Q |
| |
|
||| |||||| || ||||| ||||||||||||| ||||||| |
|
|
| T |
10582406 |
gtgttgacttaaaattataccagcgacatagtattaacagctttt |
10582450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 494
Target Start/End: Complemental strand, 9683233 - 9683075
Alignment:
| Q |
320 |
atcctgaacccatccttcaccattctatcatcaccatctttgtctcctaatgatttttccagtgaaatgttgaagatgttgagtctgaaagatattaaag |
419 |
Q |
| |
|
|||||| ||||||||||||| |||| |||| | || |||||||||||||| |||||||| | | |||||||||||| ||| ||||||| |
|
|
| T |
9683233 |
atcctggacccatccttcacaattccatcaactccgtctttgtctcctaaagatttttc---------gctccagatgttgagtcatgtagacattaaag |
9683143 |
T |
|
| Q |
420 |
gaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatcaaaattgctctgtg |
494 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
9683142 |
gaatggttgctaggggaatatgcatcaca------aggagttccataaagccagatgtatc-aaattgctctgtg |
9683075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 9825270 - 9825374
Alignment:
| Q |
25 |
tgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagcaacatttg |
124 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||| ||| | ||| | |||| || || ||| |||| | ||||||||||||||| |||| | ||| |
|
|
| T |
9825270 |
tgtgagcaattaatccttcattgtgatataaagccaagtaatatccttgttgatgaagatattgtttctcaggcgagtgattttggcattgcaagacttg |
9825369 |
T |
|
| Q |
125 |
tctca |
129 |
Q |
| |
|
||||| |
|
|
| T |
9825370 |
tctca |
9825374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 10210655 - 10210615
Alignment:
| Q |
304 |
tgttatttatctgcgtatcctgaacccatccttcaccattc |
344 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
10210655 |
tgttatttatctgcttatcctgaacccattcttcacgattc |
10210615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 7e-75; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12899732 - 12899974
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| | ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12899732 |
gcattacattatcttcatcgagaatgtgagcaattagtctttcattgtgatataaagccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
12899831 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
12899832 |
gtgattttggcatagcaagacttgtctcaacaatttctggtacctctcataagaatactagcacaattggaataaaaggaacagttggttatgctcctcc |
12899931 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaat |
243 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
12899932 |
gggtatgttttaaattcttgaatcttccattgtttttttgaat |
12899974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12958240 - 12958482
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| || || |||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
12958240 |
gcattacattatcttcatcgagaatgtgagcagttaatccttcactgtgatctaaagccaagcaatgtccttcttgatggtgacatggttgctcatgtga |
12958339 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
12958340 |
gtgattttggaatagcaagacttgtctcaaccatttccggtacctctaataagaatactagcacaattggaataaaaggaacagttggttatgctcctcc |
12958439 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaat |
243 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
12958440 |
gggtatgttttaaattcttgaatcttccattgtttttttgaat |
12958482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12907352 - 12907594
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| || || | |||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
12907352 |
gcattacattatcttcatcgagaatgtgagcagttaatcctccattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatttga |
12907451 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||| ||||| || |||| || |
|
|
| T |
12907452 |
gtgattttggcatagcaagacttgtctcaaccatttctggtacctctcataagaatactagcataatcggaataaaaggaacagttggttatgctccacc |
12907551 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaat |
243 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||| ||||||| |
|
|
| T |
12907552 |
gggtatgttttaaattctttaatcttccattgtttttttgaat |
12907594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12948806 - 12949040
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||| | |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12948806 |
gcattacattatcttcatcgataatgtgagcaattagtccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
12948905 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| || |||| || |
|
|
| T |
12948906 |
gtgattttggcatagcaagacttgtctcaaccatttccagtacctctaataagaatactagtacaattggaataaaaggaacagttggttatgctccacc |
12949005 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgttt |
235 |
Q |
| |
|
|||| ||| || || |||| |||||||||||||| |
|
|
| T |
12949006 |
gggtacgttttacattcttgaatcttccattgttt |
12949040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12932441 - 12932675
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||| ||||| || |||| |||||||||||| || || |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
12932441 |
gcattgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
12932540 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||||| ||||| ||| |||||||||| ||||| || |||| || |
|
|
| T |
12932541 |
gtgattttggcatagcaagacttgtctcaaccatttccggtacctctaataagaatactagcacaatcggagtaaaaggaacagttggttatgctccacc |
12932640 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgttt |
235 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| |
|
|
| T |
12932641 |
gggtatgttttaaattcttgaatcttccattgttt |
12932675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 7455 - 7697
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
7455 |
gcattacattaacttcatcgagaatgtgagcaattaatacttcattgtgatctaaagccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
7554 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| ||| ||||||||||||| ||||| |||||||||||||| | ||| || |||| || |
|
|
| T |
7555 |
gtgattttggcatagcaagacttgtctcaaccatttctggtacgtctaataagaatactagcacaatcggaataaaaggaacagctggttatgctccacc |
7654 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgtttctttgaat |
243 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
7655 |
gggtatgttttaaattcttgaatcttccattgtttttttgaat |
7697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17923450 - 17923216
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||| ||||| || |||| |||||||||||| || || |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
17923450 |
gcattgcattaccttcatcgagaatgtgagcagttaatccttcattgtgatctaaaaccaagcaatgtccttcttgatgatgacatggttgctcatgtga |
17923351 |
T |
|
| Q |
101 |
gtgattttggcatagcaacatttgtctcaaccattggtggtacctctcataagaatactagtacaattggaataaaaggaaccgttggctacactcctcc |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||| ||||| || |||| | |
|
|
| T |
17923350 |
gtgattttggcatagcaagacttgtctcaaccatttccggtacctctaataagaatactagtacgatcggaataaaaggaacagttggttatgctccatc |
17923251 |
T |
|
| Q |
201 |
aggtatgttctaaatgcttgcatcttccattgttt |
235 |
Q |
| |
|
|||||||| ||||| |||| ||||| | |||||| |
|
|
| T |
17923250 |
gggtatgttttaaattcttgaatcttgctttgttt |
17923216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 28605824 - 28605894
Alignment:
| Q |
40 |
attcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttgg |
110 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
28605824 |
attcattgtgatttaaagccaagcaatattcttcttcataatgacatggttgctcatgtgagtgattttgg |
28605894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 39875899 - 39875824
Alignment:
| Q |
41 |
ttcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagc |
116 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39875899 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagc |
39875824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 39884022 - 39883947
Alignment:
| Q |
41 |
ttcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagc |
116 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39884022 |
ttcattgtgatttaaaaccaagcaatgtccttcttgacgatgacatggttgctcatgtgagtgattttggcttagc |
39883947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 116
Target Start/End: Complemental strand, 39890976 - 39890901
Alignment:
| Q |
41 |
ttcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtgagtgattttggcatagc |
116 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39890976 |
ttcattgtgatttaaaaccaagcaatgtccttcttgaagatgacatggttgctcatgtgagtgattttggcttagc |
39890901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 31467209 - 31467092
Alignment:
| Q |
1 |
gcattacattatctgcatcaagaatgtgagcaattgattattcattgtgatctaaagccaagcaatgttcttctgaatgatgacatggttgctcatgtga |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||| ||||| | |||||||||||| ||||||| ||||| |||||||| ||||| ||||| |||||||||| |
|
|
| T |
31467209 |
gcatttcattatcttcatcatgaatgtcagcaacctgtcattcattgtgatttaaagcctagcaacgttcttcttgatgattctatggtagctcatgtga |
31467110 |
T |
|
| Q |
101 |
gtgattttggcatagcaa |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31467109 |
gtgattttggcatagcaa |
31467092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University