View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_1 (Length: 1066)
Name: NF1690_low_1
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 898; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 898; E-Value: 0
Query Start/End: Original strand, 19 - 1059
Target Start/End: Original strand, 8135287 - 8136326
Alignment:
| Q |
19 |
tcttgtctaatatcattgatttgattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacag |
118 |
Q |
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| T |
8135287 |
tcttgtctaatatcattgatt-gattagatatagtaagtcctgacttattgataaaacatgcatgtgagtgctgtaggcctagtgtgccaattgcaacag |
8135385 |
T |
|
| Q |
119 |
ggtgatttttataatgttggaatgtgatgattttgtttgtatgggaagatatctatcatctaatgattgtaattatagacctacatgctcctctgtctgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135386 |
ggtgatttttataatgttggaatgtgatgattttgtttgtatgggaagatatctatcatctaatgattgtaattatagacctacatgctcctctgtctgt |
8135485 |
T |
|
| Q |
219 |
agctgcattgcatgctccagttcccaaacctttcaaaatcaannnnnnnnaatgttttaccttagcatcatatcttaacttagtgcatataccctattta |
318 |
Q |
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| T |
8135486 |
agctgcattgcatgctccagttcccaaacctttcaaaatcaattttttttaatgttttaccttagcatcatatcttaacttagtgcatataccctatt-a |
8135584 |
T |
|
| Q |
319 |
tctcaaaatttaacatgtacttacctttctaattgatccagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccattcct |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8135585 |
tctcaaaatttaacatgtacttacctctctaattgatccagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccattcct |
8135684 |
T |
|
| Q |
419 |
tgctgagttggccaacaagtatacaaatgccatattccttaaggtggatgtggacgaattgaaggtaacacattctaattaatttgcacaagagtttaat |
518 |
Q |
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| T |
8135685 |
tgctgagttggccaagaagtatacaaatgccatattccttaaggtggatgtggacgaattgaaggtaacacattctaattaatttgcacaagagtttaat |
8135784 |
T |
|
| Q |
519 |
gaggatgtaatgtagttataaaactcatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttattgg |
618 |
Q |
| |
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| T |
8135785 |
gaggatgtaatgtcgttataaaactaatcatgttgtcacataaacctactttgtagccccatttgaaaaatgaccgtaaaatactaaagatttttattgg |
8135884 |
T |
|
| Q |
619 |
acgtcagtgtaaaactttttgcactctgcctnnnnnnncaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctgttg |
718 |
Q |
| |
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| T |
8135885 |
acgtcagtgtaaaactttttgcactctgcctaaaaaaacaggaaattcgataaatagatattaatcatgaataatttgttgattgaattgcagtctgttg |
8135984 |
T |
|
| Q |
719 |
ctcaagattgggctattgaagccatgccaacgtttgtgtttgtgaaagaaggaaaaattttgggcaaagtggtaggagcaaagaaagatgagctgacaca |
818 |
Q |
| |
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| T |
8135985 |
ctcaagattgggctattgaagccatgccaacgtttgtttttgtgaaagaaggaacaattttgggcaaagtggtaggagcaaagaaagatgagctgacaca |
8136084 |
T |
|
| Q |
819 |
gacaatagagaaacatgtggcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgccatc |
918 |
Q |
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| T |
8136085 |
gacaatagagaaacatgtggcatcagccaatgtttaattttgttggtggtattgttggcttcatctacaatgacataataatatttactgtgatgccatc |
8136184 |
T |
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| Q |
919 |
tttattttcattattattatcttgtagtgaacg-nnnnnnnnnnnnnnnnngcaccttacaactttatatagatggtgacgtatcgtctatgacttccaa |
1017 |
Q |
| |
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| T |
8136185 |
tttattttcattattattatcttgtagtgaacgttttttttttctttttttgcaccttacaactttatatagatggtgacgtatcgtctatgacttccaa |
8136284 |
T |
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| Q |
1018 |
gactttattccttcttgtcttaataatggtggatgatgatgt |
1059 |
Q |
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| T |
8136285 |
gactttattccttcttgtcttaataatggtggatgatgatgt |
8136326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 7353392 - 7353341
Alignment:
| Q |
358 |
agattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
409 |
Q |
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| T |
7353392 |
agattgtggtggattttactgcttcatggtgtggtccatgccgttttattgc |
7353341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 52667065 - 52667013
Alignment:
| Q |
357 |
cagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgc |
409 |
Q |
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|||||||| || ||||| ||||||||||||||||| || |||||||||||||| |
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| T |
52667065 |
cagattgtagttgatttcactgcttcttggtgtggcccgtgccgtttcattgc |
52667013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 415
Target Start/End: Complemental strand, 52663838 - 52663780
Alignment:
| Q |
357 |
cagattgttgtggattttactgcttcttggtgtggaccatgccgtttcattgcaccatt |
415 |
Q |
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| T |
52663838 |
cagattgtagttgatagtactgcttcttgctgtggtccatgccgtttcattgccccatt |
52663780 |
T |
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