View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_10 (Length: 452)
Name: NF1690_low_10
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 30337428 - 30337831
Alignment:
| Q |
20 |
gcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggc |
119 |
Q |
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| T |
30337428 |
gcttcaacaaccgtgaaaatcctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcaggg |
30337527 |
T |
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| Q |
120 |
gtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttaggaaagaaaaagaatgatagtttctgata |
219 |
Q |
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| T |
30337528 |
gtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttgggaaagaaaaagaatgatagtttctgata |
30337627 |
T |
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| Q |
220 |
t----aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtgacacctgaaattgcag |
315 |
Q |
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| T |
30337628 |
taagcaagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtaacacctgaaattccag |
30337727 |
T |
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| Q |
316 |
atatgtactgtaatttcagagatttaattactagtttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaattagaattgttttatt |
415 |
Q |
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| T |
30337728 |
atatgtactgtaatttcagtgatttaattactagtttcctttatgttgtaagcctt--gagccaattaagaagttaatgaaaaatttgaattgttttatt |
30337825 |
T |
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| Q |
416 |
attctg |
421 |
Q |
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| T |
30337826 |
attctg |
30337831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 30325962 - 30326004
Alignment:
| Q |
203 |
aatgatagtttctgatataagcacttttggctcaaaggctttt |
245 |
Q |
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| T |
30325962 |
aatgatagtttctcataaaagcacttttggctcaaaggctttt |
30326004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 30321812 - 30321862
Alignment:
| Q |
350 |
tttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatta |
402 |
Q |
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| T |
30321812 |
tttcctttatattgtaagccttgag--ccaattaagaagttaatgaaaaatta |
30321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 30333492 - 30333556
Alignment:
| Q |
225 |
acttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtt |
292 |
Q |
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| T |
30333492 |
acttttggctcaaaggctttta-ctattaaa--gtctcgtttgtttgaatgccctaaagtcacttgtt |
30333556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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