View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_12 (Length: 431)
Name: NF1690_low_12
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 3803279 - 3802880
Alignment:
| Q |
13 |
aatatcaacaccacgtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3803279 |
aatatcaacaccacgtcgaggaggaggaacatgaacaaaactgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcaccatg |
3803180 |
T |
|
| Q |
113 |
tattctatcttttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3803179 |
tattctatcttttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcat |
3803080 |
T |
|
| Q |
213 |
agatagcaacacaatcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3803079 |
agacagcaacacaatcattcttcaatgtttttcgactaattttctcatatgagaaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
3802980 |
T |
|
| Q |
313 |
actaaatggatgttcatgcatcataatccaatgtgcagtggcttctcgttgtctctcatgatcatacttagcacttggattcataagtagtggtccggaa |
412 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3802979 |
actaaatggatgttcatgcatcataacccaatgtgcagtggcttctcgttgtctctcatgatcatacttagcgcttggattcataagtagtggtccggaa |
3802880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 7958335 - 7958734
Alignment:
| Q |
13 |
aatatcaacaccacgtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
7958335 |
aatatcaacaccacgtcgaggaggaggaacatgaacaaaacttagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggtcagttagcaccatg |
7958434 |
T |
|
| Q |
113 |
tattctatcttttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcat |
212 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7958435 |
tattctatcttttgattttgcgacttctataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcat |
7958534 |
T |
|
| Q |
213 |
agatagcaacacaatcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
312 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7958535 |
agacagcaacacaatcattcttcaatgtttttcgactaattttctcatatgataaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
7958634 |
T |
|
| Q |
313 |
actaaatggatgttcatgcatcataatccaatgtgcagtggcttctcgttgtctctcatgatcatacttagcacttggattcataagtagtggtccggaa |
412 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
7958635 |
actaaatggatgttcatgcatcataacccaatgtgcagtggcttctctttgtctctcatgatcatacttagctcttggattcattagtagtggtccggaa |
7958734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 7446270 - 7446669
Alignment:
| Q |
13 |
aatatcaacaccacgtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatg |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7446270 |
aatatcaacaccatgtcgaggaggaggaacatgaacaaaaccgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcaccatg |
7446369 |
T |
|
| Q |
113 |
tattctatcttttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcat |
212 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7446370 |
tattctatcttttgattttgtgacttccataaatcagtggtcaagcaaatcttattaactatcctcaaagttgactttaatttcttcctttcagattcat |
7446469 |
T |
|
| Q |
213 |
agatagcaacacaatcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
312 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446470 |
agacagcaacacactcattcttcaatgtttttcgactaatttcctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttcttcctcaacaat |
7446569 |
T |
|
| Q |
313 |
actaaatggatgttcatgcatcataatccaatgtgcagtggcttctcgttgtctctcatgatcatacttagcacttggattcataagtagtggtccggaa |
412 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7446570 |
actaaatggatgttcatgcatcataacccaatgtgcaatggcttctcgttgtctctcatgatcatacttagcacttagattcataagtagtggtccggaa |
7446669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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