View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_13 (Length: 425)
Name: NF1690_low_13
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 43068704 - 43069138
Alignment:
| Q |
1 |
agtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgt |
100 |
Q |
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| T |
43068704 |
agtaacaaaaattggattgttaagcaagatgtggatgatgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgt |
43068803 |
T |
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| Q |
101 |
gttcatcttcttcatcagagttagatgatgatcaagaagtatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttata |
200 |
Q |
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| T |
43068804 |
gttcatcttcttcatcagagttagatgatgatcaagaagcatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttata |
43068903 |
T |
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| Q |
201 |
tgaactatcagaacttatgaaccatctccctttgaagtaagca----atatttctcatgcatgatgc---------------------atttttatattc |
275 |
Q |
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| T |
43068904 |
tgaactatcagaacttatgaaccatctccctttgaagtaagcaatatatatttctcatgcatgatgcattttttttgctatatatataatttttatattc |
43069003 |
T |
|
| Q |
276 |
tatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatctt |
375 |
Q |
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| T |
43069004 |
tatatgaatattttgttgtactttaattcaattctatatatttattgtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatctt |
43069103 |
T |
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| Q |
376 |
ttggttctttagctagagtgcagagtgtagaagat |
410 |
Q |
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| T |
43069104 |
ttggttctttagctagagtgcagagtgtagaagat |
43069138 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 34038268 - 34038218
Alignment:
| Q |
323 |
tgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatc |
373 |
Q |
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| T |
34038268 |
tgacttttgcaggagagggttgtcaatgttttatcaagggaaggctcaatc |
34038218 |
T |
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