View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_16 (Length: 410)
Name: NF1690_low_16
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 5374645 - 5374850
Alignment:
| Q |
13 |
taggtctcaccgtcaattctcagttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatattt |
112 |
Q |
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| T |
5374645 |
taggcctcaccgtcaattctcagttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatattt |
5374744 |
T |
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| Q |
113 |
attttgttctattatgtgttgcttttaatcaattgaaataaacaacaattttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaa |
212 |
Q |
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| T |
5374745 |
attttgttctattatgtgttgcttttaatcaattgaaataaacaacaattttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaa |
5374844 |
T |
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| Q |
213 |
atcttt |
218 |
Q |
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|||||| |
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| T |
5374845 |
atcttt |
5374850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 216 - 408
Target Start/End: Original strand, 5375341 - 5375531
Alignment:
| Q |
216 |
ttttccaattcacagttcttgtttctgacttcttatgttttcnnnnnnnaaggtatggaccttatctaatggaatgctacaaagaaatatatcccagagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5375341 |
ttttccaattcacagttcttgtttctgacttcttatgttttctttttttaaggtatggaccttatctaatggaatgctacaaagaaatatatcccagacg |
5375440 |
T |
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| Q |
316 |
gctatattaaataagctatcccagagggcttttatgaaataaatctgtaaacagctcatggagacgtcatataatgtgtttccatacgctttc |
408 |
Q |
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| T |
5375441 |
gctatattaaataagctatcccagagggc--ttatgaaataaatctgtaaacagctcatggagatgtcatataatgtgtttccatacgctttc |
5375531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 57 - 219
Target Start/End: Original strand, 5392916 - 5393078
Alignment:
| Q |
57 |
agacatttgattcaaatacttgtgcacaatatttagtacattcaaattctatatttattttgttctattatgtgttgcttttaatcaattgaaataaaca |
156 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| |
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| T |
5392916 |
agacattttattcaaatacttgtgcacaatatttt-tacattcaaattctatatttattttgttatattatgcattgctttcaatcaattgaaataaaca |
5393014 |
T |
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| Q |
157 |
acaatt-ttacaaaatatgaagagagtagatagtcaaaatgaaattgataaagcaaaatctttt |
219 |
Q |
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|||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5393015 |
acaattctaaaaaaatatgaagagagtagataatcaaaatgaaattgataaagcaaaatctttt |
5393078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 5370387 - 5370346
Alignment:
| Q |
265 |
aaggtatggaccttatctaatggaatgctacaaagaaatata |
306 |
Q |
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| T |
5370387 |
aaggtatggaccttatctaatggaatgctacaaagaaatata |
5370346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 5354656 - 5354617
Alignment:
| Q |
179 |
gagtagatagtcaaaatgaaattgataaagcaaaatcttt |
218 |
Q |
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| T |
5354656 |
gagtagattgtcaaaatgaaattgataaagcaaaatcttt |
5354617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 5354735 - 5354681
Alignment:
| Q |
36 |
ttttcgggttagattcgacaaagacatttgattcaaatacttgtgcacaatattt |
90 |
Q |
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||||| ||||| |||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
5354735 |
ttttcaggttatattcaacaaaggcatacgattcaaatacttgtgcacaatattt |
5354681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 5369747 - 5369691
Alignment:
| Q |
326 |
ataagctatcccagagggcttttatgaaataaatctgtaaacagctcatggagacgtcat |
385 |
Q |
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||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||| |
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| T |
5369747 |
ataagctatcccagaggc---ttatgaaataaagctgaaaacagctcatggagatgtcat |
5369691 |
T |
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