View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_17 (Length: 407)
Name: NF1690_low_17
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_17 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 50 - 299
Target Start/End: Original strand, 3227 - 3475
Alignment:
| Q |
50 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||| |
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| T |
3227 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc |
3325 |
T |
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| Q |
150 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
249 |
Q |
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| T |
3326 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
3425 |
T |
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| Q |
250 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3426 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta |
3475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 50 - 299
Target Start/End: Complemental strand, 10043843 - 10043595
Alignment:
| Q |
50 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||| |
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| T |
10043843 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc |
10043745 |
T |
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| Q |
150 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
249 |
Q |
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| T |
10043744 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
10043645 |
T |
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| Q |
250 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta |
299 |
Q |
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| T |
10043644 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta |
10043595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 50 - 299
Target Start/End: Complemental strand, 10105557 - 10105309
Alignment:
| Q |
50 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcacttccattctattacataannnnnnnaaaatattcgaacaattgaatatc |
149 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||||| |
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| T |
10105557 |
ttatggtgaaattttaatgaaaaatagtatgagatggaataatgtcatcatttccattctattacataatttttt-aaaatattcaaacagttgaatatc |
10105459 |
T |
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| Q |
150 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105458 |
acatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacacctaaagaacacatgtatcttatgaaat |
10105359 |
T |
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| Q |
250 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaactctta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10105358 |
tttaacatttatgaaatgagaataaccaaagttgaaagaagcaattctta |
10105309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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