View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_low_24 (Length: 358)

Name: NF1690_low_24
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_low_24
NF1690_low_24
[»] chr7 (17 HSPs)
chr7 (129-341)||(5375539-5375751)
chr7 (1-127)||(1431945-1432071)
chr7 (135-287)||(5369285-5369437)
chr7 (85-130)||(20553179-20553224)
chr7 (74-126)||(33894692-33894744)
chr7 (74-126)||(36598309-36598361)
chr7 (75-126)||(31751712-31751763)
chr7 (74-120)||(29574584-29574630)
chr7 (13-55)||(40689039-40689081)
chr7 (86-119)||(4966233-4966266)
chr7 (74-127)||(7453349-7453402)
chr7 (14-59)||(25296960-25297005)
chr7 (85-126)||(30751595-30751636)
chr7 (74-114)||(25422391-25422431)
chr7 (74-126)||(28844555-28844607)
chr7 (74-130)||(39542249-39542305)
chr7 (74-118)||(45859488-45859532)
[»] chr1 (17 HSPs)
chr1 (74-126)||(32515394-32515446)
chr1 (74-126)||(40485726-40485778)
chr1 (85-127)||(36070257-36070299)
chr1 (74-125)||(23373267-23373318)
chr1 (74-109)||(50319075-50319110)
chr1 (74-125)||(51730550-51730601)
chr1 (13-55)||(9656625-9656667)
chr1 (13-55)||(15361688-15361730)
chr1 (74-116)||(37175887-37175929)
chr1 (85-127)||(43371843-43371885)
chr1 (74-127)||(4549493-4549546)
chr1 (85-125)||(781120-781160)
chr1 (74-126)||(15581319-15581371)
chr1 (74-130)||(15709914-15709970)
chr1 (91-127)||(28263522-28263558)
chr1 (84-116)||(45267368-45267400)
chr1 (91-131)||(49282547-49282587)
[»] chr3 (12 HSPs)
chr3 (74-129)||(37273199-37273254)
chr3 (88-125)||(46759059-46759096)
chr3 (85-130)||(49772617-49772662)
chr3 (91-130)||(45590733-45590772)
chr3 (85-126)||(39311632-39311673)
chr3 (74-126)||(22667468-22667520)
chr3 (74-126)||(22724107-22724159)
chr3 (87-130)||(42530338-42530381)
chr3 (74-116)||(33965451-33965493)
chr3 (85-126)||(10540446-10540487)
chr3 (10-55)||(33674710-33674755)
chr3 (85-117)||(35971983-35972015)
[»] chr8 (12 HSPs)
chr8 (85-127)||(24326107-24326149)
chr8 (74-127)||(11569409-11569462)
chr8 (74-127)||(30191093-30191146)
chr8 (74-130)||(29169885-29169941)
chr8 (85-130)||(7918730-7918775)
chr8 (91-130)||(1664451-1664490)
chr8 (85-126)||(2487961-2488002)
chr8 (74-127)||(14949931-14949984)
chr8 (85-126)||(26410356-26410397)
chr8 (85-130)||(42215039-42215084)
chr8 (85-125)||(10939451-10939491)
chr8 (83-127)||(30013292-30013336)
[»] chr5 (9 HSPs)
chr5 (88-125)||(30217160-30217197)
chr5 (74-130)||(32172718-32172774)
chr5 (5-55)||(1619057-1619107)
chr5 (74-125)||(11700332-11700383)
chr5 (74-129)||(28586716-28586771)
chr5 (74-125)||(38047833-38047884)
chr5 (74-120)||(11457163-11457209)
chr5 (88-126)||(40534278-40534316)
chr5 (74-126)||(10152399-10152451)
[»] chr2 (13 HSPs)
chr2 (74-127)||(1318301-1318354)
chr2 (85-130)||(11513972-11514017)
chr2 (85-126)||(22878174-22878215)
chr2 (85-125)||(5759529-5759569)
chr2 (74-130)||(9996803-9996859)
chr2 (85-125)||(29429711-29429751)
chr2 (13-55)||(18066103-18066145)
chr2 (88-126)||(45068713-45068751)
chr2 (85-126)||(6547250-6547291)
chr2 (74-118)||(14316106-14316150)
chr2 (74-130)||(15120248-15120304)
chr2 (74-126)||(16551793-16551845)
chr2 (85-125)||(17443562-17443602)
[»] chr6 (12 HSPs)
chr6 (74-130)||(2460100-2460156)
chr6 (74-126)||(10476075-10476127)
chr6 (74-130)||(32917262-32917318)
chr6 (74-127)||(2455875-2455928)
chr6 (87-119)||(2795339-2795371)
chr6 (13-59)||(31671123-31671169)
chr6 (85-126)||(2732200-2732241)
chr6 (85-126)||(10353714-10353755)
chr6 (74-127)||(27595519-27595572)
chr6 (93-130)||(29052868-29052905)
chr6 (74-127)||(32976043-32976096)
chr6 (74-126)||(281801-281853)
[»] chr4 (15 HSPs)
chr4 (74-130)||(25896849-25896905)
chr4 (74-130)||(27123301-27123357)
chr4 (85-124)||(20521579-20521618)
chr4 (85-124)||(25434441-25434480)
chr4 (74-120)||(1137777-1137823)
chr4 (78-120)||(3176063-3176105)
chr4 (84-126)||(9316600-9316642)
chr4 (13-59)||(49219114-49219160)
chr4 (85-126)||(18628506-18628547)
chr4 (85-126)||(22471350-22471391)
chr4 (74-126)||(2996638-2996690)
chr4 (85-125)||(4071954-4071994)
chr4 (74-130)||(6987690-6987746)
chr4 (75-119)||(21043195-21043239)
chr4 (93-125)||(25434366-25434398)
[»] scaffold0199 (1 HSPs)
scaffold0199 (91-130)||(6892-6931)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 129 - 341
Target Start/End: Original strand, 5375539 - 5375751
Alignment:
Q  129 agattaattcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgccgagaactttt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5375539 agattaattcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgctgagaactttt 5375638  T
Q  229 taatatctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatcttcaactcttattgctttagttatatcagttatcatctcag 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375639 taatatctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatcttcaactcttattgctttagttatatcagttatcatctcag 5375738  T
Q  329 tgcagttggcact 341  Q
    |||||||||||||    
T  5375739 tgcagttggcact 5375751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1432071 - 1431945
Alignment:
Q  1 agataaaataaaaaagttaaattatttccatataagctatcagctgttttcataaactaaaatcagttgatggatgtcatatgatgtttccataagctct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1432071 agataaaataaaaaagttaaattattttcatataagctatcagctgttttcataaactaaaatcagttgatagatgtcatatgatgtttccataagctct 1431972  T
Q  101 cctaaacagtctcacaagtgcttatgc 127  Q
    |||||||||||||||||||||||||||    
T  1431971 cctaaacagtctcacaagtgcttatgc 1431945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 135 - 287
Target Start/End: Complemental strand, 5369437 - 5369285
Alignment:
Q  135 attcaagctgtgtagtgtaatttaactaattaactttctcattctaacagcaggtcagttactttcttagcatatagtgccgccgagaactttttaatat 234  Q
    |||||||||||||| ||| ||||||||| |||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||| ||||||||||    
T  5369437 attcaagctgtgtaatgtcatttaactatttaactttctcattcttacagcaaggcagttacttgcttagcatatagtgccgccgagaattttttaatat 5369338  T
Q  235 ctggatctgatgatggaatagttcgagtttggaatgccagtgctcataacatc 287  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  5369337 ctggatctgatgatggaattgttcgagtttggaatgccagtactcataacatc 5369285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 20553179 - 20553224
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  20553179 tgtttccataagctctcctgaacagtctcacaagtgcttatgctag 20553224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 33894692 - 33894744
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||| ||||| |||||||||||  |||||||||||||||||||||||    
T  33894692 atgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatg 33894744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 36598361 - 36598309
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| |||||||||||||||||||  ||||| |||||||| ||||||||    
T  36598361 atgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatg 36598309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 31751763 - 31751712
Alignment:
Q  75 tgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||||| | ||||||||||||||||  ||||||||||||||| ||||||||    
T  31751763 tgtcataagttgtttccataagctcttataaacagtctcacaaatgcttatg 31751712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 29574630 - 29574584
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtg 120  Q
    |||||||| | |||||||||||| ||||| |||||||||||||||||    
T  29574630 atgtcataagctgtttccataagttctccgaaacagtctcacaagtg 29574584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 40689081 - 40689039
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    ||||||||||||||| |||||||||||| |||||| |||||||    
T  40689081 aaagttaaattattttcatataagctataagctgtgttcataa 40689039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 4966233 - 4966266
Alignment:
Q  86 gtttccataagctctcctaaacagtctcacaagt 119  Q
    ||||| ||||||||||||||||||||||||||||    
T  4966233 gtttctataagctctcctaaacagtctcacaagt 4966266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 7453402 - 7453349
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||| ||| |||||||||||| ||||||  ||||||| ||||||||||||||||    
T  7453402 atgtaataagatgtttccatatgctctctcaaacagtttcacaagtgcttatgc 7453349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 25296960 - 25297005
Alignment:
Q  14 aagttaaattatttccatataagctatcagctgttttcataaacta 59  Q
    |||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  25296960 aagttaaattgttttcatataaactataagctgttttcataaacta 25297005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30751595 - 30751636
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||| ||||||||||| |||||||| ||||||||||||||    
T  30751595 tgtttctataagctctcccaaacagtcgcacaagtgcttatg 30751636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 25422391 - 25422431
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctca 114  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  25422391 atgtcataaggtgtttccataagctctcccaaacagtctca 25422431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 28844555 - 28844607
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | ||||| || ||||||||||||||||| ||||| |||||||||    
T  28844555 atgtcataagttgttttcagaagctctcctaaacagtatcacatgtgcttatg 28844607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 39542305 - 39542249
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | | |||||||||||||||  |||| ||||| ||||||||||||||||    
T  39542305 atgtcataagttatttccataagctctctaaaactgtctcgcaagtgcttatgctag 39542249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 45859532 - 45859488
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaag 118  Q
    |||||||||| ||||||| |||||||| | |||||||||||||||    
T  45859532 atgtcatatgttgtttccgtaagctcttccaaacagtctcacaag 45859488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 32515446 - 32515394
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  32515446 atgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatg 32515394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 40485778 - 40485726
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| |||||||| ||||| ||||| |||||||||||||||||||||||    
T  40485778 atgtcataagatgtttcaataagttctcccaaacagtctcacaagtgcttatg 40485726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 36070257 - 36070299
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  36070257 tgttttcataagttctcctaaacagtctcacaagtgcttatgc 36070299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 23373318 - 23373267
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||| | |||||| ||||||||||| ||||| ||||||||||||||||    
T  23373318 atgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttat 23373267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 109
Target Start/End: Complemental strand, 50319110 - 50319075
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacag 109  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50319110 atgtcatatgatgtttccataagctctcccaaacag 50319075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 51730550 - 51730601
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||| | ||||||||||||||||||  ||||||||||| |||||||||    
T  51730550 atgtcataaggtgtttccataagctctccacaacagtctcactagtgcttat 51730601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 9656625 - 9656667
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    ||||||||||||||| |||||||||||| |||||| |||||||    
T  9656625 aaagttaaattattttcatataagctataagctgtgttcataa 9656667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 15361688 - 15361730
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||    
T  15361688 aaagtcaaattattttcatataagctataagctgttttcataa 15361730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 37175929 - 37175887
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcaca 116  Q
    |||||||| | |||||||||||||||| |||||||||||||||    
T  37175929 atgtcataagttgtttccataagctcttctaaacagtctcaca 37175887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 43371885 - 43371843
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    ||||| |||||||||||  ||||||||||||||||||||||||    
T  43371885 tgttttcataagctctctcaaacagtctcacaagtgcttatgc 43371843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 4549546 - 4549493
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | |||||| ||||||||||| ||||||||||| || |||||||||    
T  4549546 atgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgc 4549493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 781160 - 781120
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||||||||||||| ||||| |||||||| |||||||    
T  781160 tgtttccataagctctccaaaacaatctcacaaatgcttat 781120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 15581319 - 15581371
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | ||||||||| |||||| | ||||| |||||||||||||||||    
T  15581319 atgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatg 15581371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 15709914 - 15709970
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | | ||||| |||| ||||| ||||||||||| |||||||||||||||    
T  15709914 atgtcataagctatttccgtaagttctcccaaacagtctcaaaagtgcttatgctag 15709970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 28263522 - 28263558
Alignment:
Q  91 cataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  28263522 cataagctctcctaaacagtcttacaagtgtttatgc 28263558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 45267400 - 45267368
Alignment:
Q  84 atgtttccataagctctcctaaacagtctcaca 116  Q
    |||||| ||||||||||||||||||||||||||    
T  45267400 atgttttcataagctctcctaaacagtctcaca 45267368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 49282587 - 49282547
Alignment:
Q  91 cataagctctcctaaacagtctcacaagtgcttatgctaga 131  Q
    |||||||| ||| ||||||||||| ||||||||||||||||    
T  49282587 cataagctttcccaaacagtctcataagtgcttatgctaga 49282547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 37273199 - 37273254
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgcta 129  Q
    |||||||| | |||||||||||||||||| |||||||||||| |||||||||||||    
T  37273199 atgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatgcta 37273254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 46759096 - 46759059
Alignment:
Q  88 ttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46759096 ttccataagctctcctaaacagtctcacaagtgcttat 46759059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 49772662 - 49772617
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||    
T  49772662 tgtttccataagctctcctaaacagtctcactagtgtttatgctag 49772617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 45590733 - 45590772
Alignment:
Q  91 cataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctag 45590772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 39311673 - 39311632
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  39311673 tgtttccataagctctccaaaatagtctcacaagtgcttatg 39311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 22667468 - 22667520
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||||||||    
T  22667468 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatg 22667520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 22724107 - 22724159
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||| ||||| ||||||||||| |||||  |||||||||||||||||||||||    
T  22724107 atgttatatgctgtttccataaactctctcaaacagtctcacaagtgcttatg 22724159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 42530338 - 42530381
Alignment:
Q  87 tttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||||||| ||  |||||||||||||||||||||||||||    
T  42530338 tttccataagctttctgaaacagtctcacaagtgcttatgctag 42530381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 33965493 - 33965451
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcaca 116  Q
    |||||||||| | |||||||||| |||||||||||||||||||    
T  33965493 atgtcatatgctatttccataaggtctcctaaacagtctcaca 33965451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 10540487 - 10540446
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||||||||||||| ||||| | |||||||||||    
T  10540487 tgtttccataagctctcctaaagagtctgataagtgcttatg 10540446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 33674755 - 33674710
Alignment:
Q  10 aaaaaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    |||||||||||||| ||| ||||||| |||| ||||||||||||||    
T  33674755 aaaaaagttaaattttttgcatataaactataagctgttttcataa 33674710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 35972015 - 35971983
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaa 117  Q
    |||||||||||||||| ||||||||||||||||    
T  35972015 tgtttccataagctctactaaacagtctcacaa 35971983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 24326107 - 24326149
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  24326107 tgtttccataagctctcccaaacagtctcacaagtgcttatgc 24326149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 11569462 - 11569409
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||| ||||||    
T  11569462 atgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgc 11569409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 30191146 - 30191093
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | |||||||||||||||||| ||||||||| ||||||||||||||    
T  30191146 atgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgc 30191093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 29169941 - 29169885
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||||| ||||| |||||||||||| ||||| | |||||||||||||||||||    
T  29169941 atgtcatatgctgttttcataagctctcccaaacaatttcacaagtgcttatgctag 29169885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 7918775 - 7918730
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||    
T  7918775 tgttttcataagctctcccaaacagtctcacaagtgtttatgctag 7918730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 1664451 - 1664490
Alignment:
Q  91 cataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  1664451 cataagctctcccaaacagtctcacaagtgtttatgctag 1664490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 2488002 - 2487961
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||| |||||| ||||| |||||||||||||||||||||||    
T  2488002 tgttttcataagttctcccaaacagtctcacaagtgcttatg 2487961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 14949931 - 14949984
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | | ||| ||||||||||||||||||||||||||| || ||||||    
T  14949931 atgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatgc 14949984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 26410356 - 26410397
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  26410356 tgtttccataagctctcccaagcagtctcagaagtgcttatg 26410397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 42215084 - 42215039
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    ||||| |||||| ||||| ||||||| |||||||||||||||||||    
T  42215084 tgttttcataagttctcccaaacagtgtcacaagtgcttatgctag 42215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 10939451 - 10939491
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    ||||| |||||| ||||||||||||||||| ||||||||||    
T  10939451 tgttttcataagttctcctaaacagtctcagaagtgcttat 10939491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 30013292 - 30013336
Alignment:
Q  83 gatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||||||||||| ||  |||||||||||||| |||||||||    
T  30013292 gatgtttccataagctttcaaaaacagtctcacaaatgcttatgc 30013336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 30217160 - 30217197
Alignment:
Q  88 ttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30217160 ttccataagctctcctaaacagtctcacaagtgcttat 30217197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 32172718 - 32172774
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||||||||||||||| ||||  |||||||||||||||||||||    
T  32172718 atgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctag 32172774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 1619057 - 1619107
Alignment:
Q  5 aaaataaaaaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    ||||||| ||||||||||| ||||| |||||||||| ||||||||||||||    
T  1619057 aaaataataaagttaaattctttccgtataagctataagctgttttcataa 1619107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 11700383 - 11700332
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||| | ||||||||||| ||||||| || ||||||||||||||||||    
T  11700383 atgtcataagttgtttccataaactctcctcaatagtctcacaagtgcttat 11700332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 28586771 - 28586716
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgcta 129  Q
    |||||||| | | |||||||||||||||| ||||||| |||||| |||||||||||    
T  28586771 atgtcataagctatttccataagctctcccaaacagtttcacaaatgcttatgcta 28586716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 38047884 - 38047833
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||| | |||||||||||||||||| |||||||| ||||||| |||||    
T  38047884 atgtcataagttgtttccataagctctcccaaacagtcacacaagtacttat 38047833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 11457163 - 11457209
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtg 120  Q
    |||||||| | |||||||||||||||| | |||||||||||||||||    
T  11457163 atgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 40534278 - 40534316
Alignment:
Q  88 ttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  40534278 ttccataagctctcctaaacagtatcacaagtgtttatg 40534316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 10152399 - 10152451
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | ||||| |||||||||||| ||| ||||||||| |||||||||    
T  10152399 atgtcataagttgttttcataagctctccaaaatagtctcacatgtgcttatg 10152451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 1318301 - 1318354
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| ||||||| |||||||||||  ||||||||||||||||||||||||    
T  1318301 atgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttatgc 1318354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 11513972 - 11514017
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  11513972 tgttttcataagctctctaaaacagtctcacaagtgcttatgctag 11514017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 22878174 - 22878215
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  22878174 tgtttccataaggtctcccaaacagtctcacaagtgcttatg 22878215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 5759569 - 5759529
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  5759569 tgtttccataagctctcccaaacagtctcacaagtacttat 5759529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 9996803 - 9996859
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||| ||||||||||| || ||||||||||||| ||||||||||    
T  9996803 atgtcataagttgtttctataagctctcccaagcagtctcacaagtacttatgctag 9996859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 29429751 - 29429711
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  29429751 tgtttctataagctctcccaaacagtctcacaagtgcttat 29429711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18066103 - 18066145
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataa 55  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||    
T  18066103 aaagttaaattgttttcatataagctataagctgttttcataa 18066145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 45068713 - 45068751
Alignment:
Q  88 ttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  45068713 ttccataagctctcctaaactgtctcacaagtgattatg 45068751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 6547250 - 6547291
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  6547250 tgtttccataaactctcacaaacagtctcacaagtgcttatg 6547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 14316150 - 14316106
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaag 118  Q
    |||||||| | |||||||||||||||||| ||| |||||||||||    
T  14316150 atgtcataagttgtttccataagctctccaaaatagtctcacaag 14316106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 15120248 - 15120304
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||||||||||||||| ||||||  |||||| || |||||||||    
T  15120248 atgtcataagttgtttccataagctctcccaaacagattcacaactgtttatgctag 15120304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 16551845 - 16551793
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| ||| |||||||||||||| ||||||| |||| |||||| |||||    
T  16551845 atgtcataagatctttccataagctcttctaaacaatctcgcaagtgtttatg 16551793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 17443602 - 17443562
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttat 17443562  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 2460156 - 2460100
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||||||||||||||  |||||||||||||||| ||||||||||    
T  2460156 atgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctag 2460100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 10476127 - 10476075
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||  ||||||||||||||||||| |||||||||||| |||||||||||    
T  10476127 atgtcattagatgtttccataagctctcataaacagtctcagaagtgcttatg 10476075  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 32917262 - 32917318
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||| |||| ||||    
T  32917262 atgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttattctag 32917318  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 2455875 - 2455928
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | |||||||||||||||| ||||||| |||| |||||||||||||    
T  2455875 atgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgc 2455928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 2795339 - 2795371
Alignment:
Q  87 tttccataagctctcctaaacagtctcacaagt 119  Q
    |||||||||||||||||||||||||||||||||    
T  2795339 tttccataagctctcctaaacagtctcacaagt 2795371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31671169 - 31671123
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataaacta 59  Q
    ||||||||||| ||| |||||||||||| |||||||||| |||||||    
T  31671169 aaagttaaattgttttcatataagctataagctgttttcgtaaacta 31671123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 2732241 - 2732200
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  2732241 tgtttccataagcttttccaaacagtctcacaagtgcttatg 2732200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 10353755 - 10353714
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||| || ||||||||| |||||||||||||||||||||||    
T  10353755 tgttttcacaagctctcccaaacagtctcacaagtgcttatg 10353714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 27595572 - 27595519
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | |||||||||||  ||||| ||||||||||| ||||||||||||    
T  27595572 atgtcataagttgtttccataaattctcccaaacagtctcataagtgcttatgc 27595519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 29052905 - 29052868
Alignment:
Q  93 taagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  29052905 taagctcttctaaagagtctcacaagtgcttatgctag 29052868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 32976043 - 32976096
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgc 127  Q
    |||||||| | |||||| ||||||||| | |||||||||||||||| |||||||    
T  32976043 atgtcataagctgtttctataagctcttccaaacagtctcacaagtacttatgc 32976096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 281853 - 281801
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | || |||||| |||||||| |||||||||||||||| ||||||    
T  281853 atgtcataagttgcttccattagctctcccaaacagtctcacaagtacttatg 281801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 25896849 - 25896905
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | | |||| ||||||||||||||||||||||||||||||| |||||||    
T  25896849 atgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctag 25896905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 27123357 - 27123301
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | |||||||||||||||||  |||||||||||||||| ||||||||||    
T  27123357 atgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctag 27123301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 20521579 - 20521618
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgctta 124  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  20521579 tgtttccataaactctcctaaacagtctcagaagtgctta 20521618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 124
Target Start/End: Complemental strand, 25434480 - 25434441
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgctta 124  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  25434480 tgttttcataagctctcctaaacagtctcactagtgctta 25434441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 1137777 - 1137823
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtg 120  Q
    |||||||| ||||||| |||||| ||||||||||||| |||||||||    
T  1137777 atgtcataagatgttttcataagttctcctaaacagtgtcacaagtg 1137823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 3176105 - 3176063
Alignment:
Q  78 catatgatgtttccataagctctcctaaacagtctcacaagtg 120  Q
    |||| ||||||| |||||||||||||||||||| |||||||||    
T  3176105 cataagatgttttcataagctctcctaaacagtttcacaagtg 3176063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 9316600 - 9316642
Alignment:
Q  84 atgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||    
T  9316600 atgtttccataagctctcccaaacagtttcacaagtgtttatg 9316642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 49219114 - 49219160
Alignment:
Q  13 aaagttaaattatttccatataagctatcagctgttttcataaacta 59  Q
    ||||| ||||||||| |||||||||||| || |||||||||||||||    
T  49219114 aaagtcaaattattttcatataagctataagttgttttcataaacta 49219160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 18628547 - 18628506
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  18628547 tgttttcataagctctcccaaacagtctcacaagtgtttatg 18628506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 22471350 - 22471391
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    ||||| |||||| ||||| |||||||||||||||||||||||    
T  22471350 tgttttcataagttctcccaaacagtctcacaagtgcttatg 22471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 2996638 - 2996690
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatg 126  Q
    |||||||| | ||||| |||||||||||  ||||||||||| |||||||||||    
T  2996638 atgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatg 2996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 4071954 - 4071994
Alignment:
Q  85 tgtttccataagctctcctaaacagtctcacaagtgcttat 125  Q
    ||||| |||||||||||  ||||||||||||||||||||||    
T  4071954 tgttttcataagctctctcaaacagtctcacaagtgcttat 4071994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 6987746 - 6987690
Alignment:
Q  74 atgtcatatgatgtttccataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||| | ||| |||||||||||||| ||||||||||||||   ||||||||||    
T  6987746 atgtcataagttgtatccataagctctcccaaacagtctcacaaacacttatgctag 6987690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 21043239 - 21043195
Alignment:
Q  75 tgtcatatgatgtttccataagctctcctaaacagtctcacaagt 119  Q
    ||||||| | ||||||||||| |||||| ||||||||||||||||    
T  21043239 tgtcataagctgtttccataacctctcccaaacagtctcacaagt 21043195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 25434398 - 25434366
Alignment:
Q  93 taagctctcctaaacagtctcacaagtgcttat 125  Q
    |||||||||||||||||| ||||||||||||||    
T  25434398 taagctctcctaaacagtttcacaagtgcttat 25434366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 6892 - 6931
Alignment:
Q  91 cataagctctcctaaacagtctcacaagtgcttatgctag 130  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  6892 cataagctctcccaaacagtctcacaagtgtttatgctag 6931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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