View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1690_low_27 (Length: 346)
Name: NF1690_low_27
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 160 - 328
Target Start/End: Complemental strand, 8144294 - 8144126
Alignment:
| Q |
160 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctactgttgcaagtgcttatgggacaatttgggagagaatgttac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8144294 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctgctgttgcaagtgcttatgggacaatttgggagagaatgttac |
8144195 |
T |
|
| Q |
260 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagatgtatttggatcccagttg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8144194 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagaagtatttggatcccagttg |
8144126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 160 - 327
Target Start/End: Complemental strand, 8150515 - 8150348
Alignment:
| Q |
160 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctactgttgcaagtgcttatgggacaatttgggagagaatgttac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8150515 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctgctgttgcaagtgcttatgggacaatttgggagagaatgttac |
8150416 |
T |
|
| Q |
260 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagatgtatttggatcccagtt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8150415 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagaagtatttggatcccagtt |
8150348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 160 - 327
Target Start/End: Complemental strand, 8155139 - 8154972
Alignment:
| Q |
160 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctactgttgcaagtgcttatgggacaatttgggagagaatgttac |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155139 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctgctgttgcaagtgcttatgggacaatttgggagagaatgttac |
8155040 |
T |
|
| Q |
260 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagatgtatttggatcccagtt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8155039 |
cagatcttatgatcggagtttatgagctcctagaagctgttttaccaagaagtatttggatcccagtt |
8154972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8150702 - 8150555
Alignment:
| Q |
1 |
gagcagatattcaacaccaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8150702 |
gagcagatattcaacactaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaat |
8150603 |
T |
|
| Q |
101 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8150602 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
8150555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8155326 - 8155179
Alignment:
| Q |
1 |
gagcagatattcaacaccaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155326 |
gagcagatattcaacactaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaat |
8155227 |
T |
|
| Q |
101 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155226 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
8155179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8144481 - 8144334
Alignment:
| Q |
1 |
gagcagatattcaacaccaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8144481 |
gagcagatattcaacactaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacaaaatcttcaagagcattaaat |
8144382 |
T |
|
| Q |
101 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8144381 |
gtctgatttatatgtaataccctagtcagataggtggaaagttgaaga |
8144334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 328
Target Start/End: Complemental strand, 8177074 - 8176786
Alignment:
| Q |
50 |
caaattgtaatattgaacttattcaagacaaaatcctcaagagcattaaatgtctgatttatatgtaataccctagtcagataggtggaaagt---tgaa |
146 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||||||||||||||||| |||||||||||||||| | | | |||| |
|
|
| T |
8177074 |
caaattgtaatattgaacttatttaagacaaaatcattacgagcactaaatgtctgatttatatgtaatgccctagtcagataggtagtacttatgtgaa |
8176975 |
T |
|
| Q |
147 |
gagca--ttaaat----gt--ctcattattaggggggctgtttggaaatgcttatgtttggattattttggcttgtctactgttgcaagtgcttatggga |
238 |
Q |
| |
|
|| | | |||| || |||||||| |||||| |||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
8176974 |
aagaaaatcaaatacaagttgctcattataaggggg-ctgtttggaatggcttatgtttggattattttgccttatctactgttgcaagtgcttatggga |
8176876 |
T |
|
| Q |
239 |
caatttgggagagaatgttaccagatcttatgatcggagtttatgagctcctagaagctgttttaccaagatgtatttggatcccagttg |
328 |
Q |
| |
|
| |||||||||||||| | ||||||| |||||||| ||| ||||||||||| ||||||||||||||||||| || |||||||||| |||| |
|
|
| T |
8176875 |
ctatttgggagagaatatgaccagatattatgatcagagcttatgagctccaagaagctgttttaccaagaggtgtttggatccctgttg |
8176786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8182717 - 8182570
Alignment:
| Q |
1 |
gagcagatattcaacaccaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagac--aaaatcctcaagagcattaa |
98 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||| |
|
|
| T |
8182717 |
gagcagatattcaacactaatcccatattatgcaaactggcacacaaagcaaattgtaatattgaacttattcaagacatataatcattaagagcattaa |
8182618 |
T |
|
| Q |
99 |
atgtctgatttatatgtaataccctagtcagataggtggaaagttgaa |
146 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8182617 |
atgtctaatttatatgtaatgccctagtcagataggtggaaagttgaa |
8182570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 8170893 - 8170793
Alignment:
| Q |
171 |
gggggctgtttggaaatgcttatgtttggattattttggcttgtctactgttgcaagtgcttatgggacaatttgggagagaatgttaccagatcttatg |
270 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| | | |||| |||||| |
|
|
| T |
8170893 |
gggggctgtttggaatggcttatgtatggattattctggcttatctactgttgcaagtgcttatgggactatttgggagagaatatgatcagagcttatg |
8170794 |
T |
|
| Q |
271 |
a |
271 |
Q |
| |
|
| |
|
|
| T |
8170793 |
a |
8170793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 8182528 - 8182477
Alignment:
| Q |
160 |
ctcattattaggggggctgtttggaaatgcttatgtttggattattttggctt |
212 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||||||||||||||||| |
|
|
| T |
8182528 |
ctcattattaggggg-ctgtttggaatggtttatgtttggattattttggctt |
8182477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 8170798 - 8170758
Alignment:
| Q |
279 |
ttatgagctcctagaagctgttttaccaagatgtatttgga |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
8170798 |
ttatgagctcctagaatctgttttaccaagaggcatttgga |
8170758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University