View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_28 (Length: 345)
Name: NF1690_low_28
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_28 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 6974237 - 6973902
Alignment:
| Q |
12 |
atacttggtattggtttttgtctatggaatgatgtgctccatgataagattattattttgggttgagagtgaaatatgtggtggataatttttaggcata |
111 |
Q |
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| T |
6974237 |
atacttggtattggtttttgtctatggaatgatgtgctccatgataagattattattttgggttgagagtgaaatatgtggtggatagtttttaggcatt |
6974138 |
T |
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| Q |
112 |
cataagacacgtcacttatataaaatataaattgtgtcgttatcctttcttttctttccaaaactagctaggcaacaaaatgaggaatcaaaaaagctat |
211 |
Q |
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| T |
6974137 |
cataagacacgtcacttatataaaatataaattgtgtcgttatcctttcttttctttccaaaactagctaggcaacaaaatgaggaatcaaaaaagctat |
6974038 |
T |
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| Q |
212 |
ataaaagcaagcataccatgggctcaaaaaatgagcacgtaccaattgatctctcctttcatactagcat--atattaagaaaatcttctctacgaagta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6974037 |
ataaaagcaagcataccatgggctcaaaaaatgagcacgtaccaattgatctctcctttcatactagcatatatattaagaaaatcttctctacgaagta |
6973938 |
T |
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| Q |
310 |
aatgaataattccaaggcctattatatactgttaaa |
345 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
6973937 |
aatgaataaatccaaggcctattatatactgttaaa |
6973902 |
T |
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