View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_29 (Length: 341)
Name: NF1690_low_29
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 28673994 - 28674313
Alignment:
| Q |
16 |
acaacttttggatcaaaaaaccagagtgagggactaaaaaacttcaatttaaaaaggtgatcgatttcataagcgattgaaaataaaggatcaaaattgc |
115 |
Q |
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|||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28673994 |
acaaattttggattcaaaaacctgagtgagggactaaaatacttcaatttaaaaaggtgatcgatttcataagcgattgaaaataaaggatcaaaattgc |
28674093 |
T |
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| Q |
116 |
aataaagtcaattatttaataagcttagttattaaataagcttagtaaagaaat-------gatgagctagccttcaaaagatccccaatgttcactaca |
208 |
Q |
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| T |
28674094 |
aataaagtcaattatttaataagcttagttattaaataagcttagtaaagatattatgcatgatgagctaaccttcaaaagatccccaatgttcactaca |
28674193 |
T |
|
| Q |
209 |
agggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaagctactgt |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
28674194 |
agggcaccatgagagggaggcacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtattgtcataaagctaccgt |
28674293 |
T |
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| Q |
309 |
ccgtgtgctttgtagtgcct |
328 |
Q |
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|||||||||||||||||||| |
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| T |
28674294 |
ccgtgtgctttgtagtgcct |
28674313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 28670268 - 28670385
Alignment:
| Q |
187 |
aagatccccaatgttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcaga |
286 |
Q |
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|||||| ||||||||||||||||| || |||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||| |||| | |
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| T |
28670268 |
aagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccactgattgtcatgaagaatttgtaagccaccaatatgatcttgcaaa |
28670367 |
T |
|
| Q |
287 |
agtactgtcataaagcta |
304 |
Q |
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|||||||| ||||||||| |
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| T |
28670368 |
agtactgtaataaagcta |
28670385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 28648709 - 28648827
Alignment:
| Q |
187 |
aagatccccaatgttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcaga |
286 |
Q |
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||||||||||| |||||||||||| || |||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||| |||| | |
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| T |
28648709 |
aagatccccaacgttcactacaagagctccatgaatgggagctacatcaatccattgattgttatgaagaacttctaagccaccaatatgatcttgcaaa |
28648808 |
T |
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| Q |
287 |
agtactgtcataaagctac |
305 |
Q |
| |
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|||| ||| |||||||||| |
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| T |
28648809 |
agtattgtaataaagctac |
28648827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 304
Target Start/End: Original strand, 28639414 - 28639519
Alignment:
| Q |
199 |
gttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcata |
298 |
Q |
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|
|||||||||||| || |||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| || || ||| ||| |
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| T |
28639414 |
gttcactacaagagctccatgaatgggagaaacatcaatccattgattgtcatgaagaacttctaagccaccaatatgatcttgcaaaactattgtaata |
28639513 |
T |
|
| Q |
299 |
aagcta |
304 |
Q |
| |
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|||||| |
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| T |
28639514 |
aagcta |
28639519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 28690523 - 28690629
Alignment:
| Q |
184 |
caaaagatccccaatgttcactacaagggcaccat-gagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctg |
282 |
Q |
| |
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||||||||| |||||||| || ||||| || |||| || ||| || |||||||| |||||||| ||||||||||||||||||||| |||| |||||| || |
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| T |
28690523 |
caaaagatcaccaatgtttacgacaagagctccattgatagg-agttacatcaatccattgatcgtcatgaagaacttgtaagccgccaatatgatcttg |
28690621 |
T |
|
| Q |
283 |
cagaagta |
290 |
Q |
| |
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|| ||||| |
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| T |
28690622 |
caaaagta |
28690629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 33761850 - 33761898
Alignment:
| Q |
224 |
ggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaa |
272 |
Q |
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||||| ||||||||||||||||| | |||||||||||| || ||||||| |
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| T |
33761850 |
ggaggaacatcaacccattgattctgatgaagaacttgaaaaccaccaa |
33761898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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