View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_30 (Length: 340)
Name: NF1690_low_30
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 330
Target Start/End: Complemental strand, 31463921 - 31463597
Alignment:
| Q |
4 |
tttagtcttgagtagacgccagcactaaatattccgatttgtaaattaacatttaattattgaagttcatggctggacggccatatactaatgaccatat |
103 |
Q |
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| T |
31463921 |
tttattctagagtagacgccagcactatatattccgattggagaattaacatttaattatggaagttaatggctggacggccatatactaatgaccatat |
31463822 |
T |
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| Q |
104 |
attatttgttttgtttcaatgacatactatctaaaatgatttgcaatagaaacaaataataatttatttgttcgtgaataataatggacagaagaacatc |
203 |
Q |
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| T |
31463821 |
attatttgttttgtttcaatgacatactatctaaaatgatttgcaatagaaacaaataataatttatttgttcgtgaataataatggacagaagaaca-- |
31463724 |
T |
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| Q |
204 |
tctagtcaaaaatagtataatgaacagaagaacctaatttatcgagaagcaaagaacgtgggctatatttggtaaaattcataaatcaaagtcacgaaca |
303 |
Q |
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| T |
31463723 |
tctagtcaaaaatagtataatgaacagaagaacctaatttatcgagaagcaaagaacgtgggctatatttggtaaaattcataaatcaaagtcacgaaca |
31463624 |
T |
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| Q |
304 |
atcgagtctgatattcatcgcattcat |
330 |
Q |
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| T |
31463623 |
atcgagtctgatattcatcgcattcat |
31463597 |
T |
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