View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_31 (Length: 338)
Name: NF1690_low_31
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 21 - 319
Target Start/End: Complemental strand, 43823407 - 43823109
Alignment:
| Q |
21 |
atcagtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttatt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823407 |
atcagtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttatt |
43823308 |
T |
|
| Q |
121 |
gctacattacagtatctggttatcatagtggcgaatttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtatctttgggagt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823307 |
gctacattacagtatctggttatcatagtggcgaatttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtatctttgggagt |
43823208 |
T |
|
| Q |
221 |
taatatctgcatatatcctatctgggctggagaggatttgcataatcttttgataaaaaatttcacgggtgttgcaacatcattggaaggtactttatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43823207 |
taatatctgcatatatcctatctgggctggagaggatttgcataatcttttgataaaaaatttcacgggtgttgcaacatcactggaaggtactttatt |
43823109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 43816445 - 43816142
Alignment:
| Q |
20 |
aatcagtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttat |
119 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43816445 |
aatcagtacattcattgttggattttgcgctacctatgcaaaattatacccaactttgaagccttatgaatatgggttccgtgtgttcttgatcacttat |
43816346 |
T |
|
| Q |
120 |
tgctacattacagtatctggttatcatagtggcgaatttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtatctttgggag |
219 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
43816345 |
tgctacattacggtatctggttatcatactggcgaatttcttgatacatctataagtagatttttgctcattgcgcttggtgctgctgtgtctttgggag |
43816246 |
T |
|
| Q |
220 |
ttaatatctgcatatatcctatctgggctggagaggatttgcataatcttttgataaaaaatttcacgggtgttgcaacatcattggaaggtactttatt |
319 |
Q |
| |
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| ||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||| |||||||||||| || |||||||||| ||||| |
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| T |
43816245 |
tcaatatctgcatatatcctatctgggctggcgaggatctgcataatcttgtggtaaaaaatttcatgggtgttgcaacgtctttggaaggtattttata |
43816146 |
T |
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| Q |
320 |
acat |
323 |
Q |
| |
|
|||| |
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|
| T |
43816145 |
acat |
43816142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 301
Target Start/End: Complemental strand, 43830667 - 43830387
Alignment:
| Q |
21 |
atcagtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttatt |
120 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||| ||||||||| | || |||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
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|
| T |
43830667 |
atcactacattcattgttggattctgtgctacttatgcaaaactctatccaactttaaagccttatgaatatggtttccgtgtgttcttgatcacttatt |
43830568 |
T |
|
| Q |
121 |
gctacattacagtatctggttatcatagtggcgaatttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtatctttgggagt |
220 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43830567 |
gctacattacagtatctggttatcatactggtgagtttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtctctttgggagt |
43830468 |
T |
|
| Q |
221 |
taatatctgcatatatcctatctgggctggagaggatttgcataatcttttgataaaaaatttcacgggtgttgcaacatc |
301 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
43830467 |
caatatctgcatatatcctatttgggccggagaagatttgtataatcttgtgataaaaaatttcatgggcgttgcaacatc |
43830387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 4999249 - 4999146
Alignment:
| Q |
24 |
agtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttattgct |
123 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| | ||||| |||||||||| |||||||||| | ||||||||||||||||| |||||||||| |
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| T |
4999249 |
agtacattcattgttggattctgtgctacttatgcaaaactctaccctactttgaagcgttatgaatatcgtttccgtgtgttcttgatcacttattgct |
4999150 |
T |
|
| Q |
124 |
acat |
127 |
Q |
| |
|
|||| |
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|
| T |
4999149 |
acat |
4999146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 31807477 - 31807734
Alignment:
| Q |
54 |
tatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttattgctacattacagtatctggttatcatagtggcg |
153 |
Q |
| |
|
||||||||| | || ||||| ||||| ||||||||||||| ||||||||||||||||| || ||||| ||| ||| |||||||| |||| | || | |
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|
| T |
31807477 |
tatgcaaaactatatccaacaatgaaggcttatgaatatggattccgtgtgttcttgatcacctattgttacgttattgtatctggatatcgaaccggag |
31807576 |
T |
|
| Q |
154 |
aatttcttgatacatctataagtagatttttgctcattgcacttggtgctgctgtatctttgggagttaatatctgcatatatcctatctgggctggaga |
253 |
Q |
| |
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| |||||| ||||| | | || ||||||||||||||||| |||||||||||||||||| | || || ||| | ||||||||||| || ||||| || || |
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| T |
31807577 |
actttcttcatacagcaacaaacagatttttgctcattgctcttggtgctgctgtatctgttggcgtaaatgtgtgcatatatccaatatgggccggtga |
31807676 |
T |
|
| Q |
254 |
ggatttgcataatcttttgataaaaaatttcacgggtgttgcaacatcattggaaggt |
311 |
Q |
| |
|
||| | ||| ||||| | ||||||||||| || || ||||||||||| |||||| |
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|
| T |
31807677 |
agatctacattatcttgtcgcgaaaaatttcacaggcgtagcaacatcattagaaggt |
31807734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 34804058 - 34803955
Alignment:
| Q |
24 |
agtacattcattgttggattttgtattacctatgcaaaattgtacccaactttgaagccttatgaatatgggttccgtgtgttcttgattacttattgct |
123 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||||||| | ||||| ||||||||||| ||| ||||||| ||||||||||||||||| |||||||||| |
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| T |
34804058 |
agtacattcattgttggattctgtgctacttatgcaaaactctaccctactttgaagccatatcaatatggtttccgtgtgttcttgatcacttattgct |
34803959 |
T |
|
| Q |
124 |
acat |
127 |
Q |
| |
|
|||| |
|
|
| T |
34803958 |
acat |
34803955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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