View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_32 (Length: 332)
Name: NF1690_low_32
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 2834983 - 2834679
Alignment:
| Q |
16 |
aaaaccacttcatatgaatgaatatttttattttgctaaccacgaccgatgctactatcgttatgtagctgtaaatttaaatgcctagttgatttaaagt |
115 |
Q |
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| T |
2834983 |
aaaaccacttcatatgaatgaatatttttattttgctaaccacgatcgatgctactatcgttatgtagctgtaaatttaaacgcctagttgatttaaagt |
2834884 |
T |
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| Q |
116 |
aaatctggacgatatgtatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaactatttatttaaaaattcaaagttagacacttcgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2834883 |
aaatctggacgatatgtatgcgtctcagccaaccggtttcatccatccatcatttcctcaccaactatttatttaaaaattcaaagttagacacttcgct |
2834784 |
T |
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| Q |
216 |
ctactatcgnnnnnnnngctaaccaagatcgatgctactatcgttttgaagccnnnnnnngtcttatactatctaaactggttgcctgcaccgggcctga |
315 |
Q |
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| T |
2834783 |
ctactatcgttttttttgctaaccaagatcgatgctactatcgttttgaagccaaaaaaagtcttatactatctaaactggttgcctgcaccgggcctga |
2834684 |
T |
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| Q |
316 |
tttca |
320 |
Q |
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||||| |
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| T |
2834683 |
tttca |
2834679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 2821440 - 2821533
Alignment:
| Q |
82 |
agctgtaaatttaaatgcctagttgatttaaagtaaatctggacga----tatgtatgcgtctcagccaaccggtttcatccatccatcatttc |
171 |
Q |
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| T |
2821440 |
agctgtaaatttatatgcctagttgatttgaagttaatcaggaggacatgtatgtatgtgtctcagccaaccggtttcatccacccatcatttc |
2821533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 2771885 - 2771988
Alignment:
| Q |
32 |
aatgaatatttttattttgctaaccacgaccgatgctactatcgttatgtagctgtaaatttaaatgcctagttgatttaaagtaaatctggacgatatg |
131 |
Q |
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||||||||| |||||||||||||||| | |||||||||||| | || ||||||||| | |||| ||||||||||||| |||| |||| || |||||| |
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| T |
2771885 |
aatgaatatgtttattttgctaaccaagcttgatgctactatcataatctagctgtaactataaaggcctagttgatttgaagttaatcgagaggatatg |
2771984 |
T |
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| Q |
132 |
tatg |
135 |
Q |
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|||| |
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| T |
2771985 |
tatg |
2771988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 2834666 - 2834621
Alignment:
| Q |
169 |
ttcctcaccaactatttatttaaaaattcaaagttagacacttcgc |
214 |
Q |
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| T |
2834666 |
ttcctcgccaactatttatttaaaaattcaaagtcagacacttcgc |
2834621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 2810124 - 2810169
Alignment:
| Q |
172 |
ctcaccaactatttatttaaaaattcaaagttagacacttcgctct |
217 |
Q |
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|||||| |||||||||||| ||||||||||| | |||||||||||| |
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| T |
2810124 |
ctcaccgactatttatttataaattcaaagtcatacacttcgctct |
2810169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 2751919 - 2751951
Alignment:
| Q |
25 |
tcatatgaatgaatatttttattttgctaacca |
57 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
2751919 |
tcatttgaatgaatatttttattttgctaacca |
2751951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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