View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_35 (Length: 319)
Name: NF1690_low_35
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 28540769 - 28540469
Alignment:
| Q |
1 |
aaaattaacacattattgtcacaaaacatgtaaggtggactatgttatatttgtttctaaa-tattttcatgataaaatagaattaagtggagtgttctc |
99 |
Q |
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| T |
28540769 |
aaaattaacacattattgtcacaaaacatgtaaggtggactatgttatatttgtttctaaaatattttcatgataaaatagaattaagtggagtgttctc |
28540670 |
T |
|
| Q |
100 |
tcctatattcttctctgaacatgtttgctatcctcatcctagccattatcaattaaactaaaagtttaaatataattatcatctactggcatagttagca |
199 |
Q |
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||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28540669 |
tcctatattct---cttaacatggttgctatcctcatcctagccattatcaattaaactaaaaatttaaatataattatcatctactggcatagttagca |
28540573 |
T |
|
| Q |
200 |
aatattaattaaattaaataacaacaattatttttattctaaaagaggatgaagaaagagactcacgtgacggaatcaccgacgttaccaccacattgat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28540572 |
aatattaattaaattaaataacaacaattatttttattctaaaagaggatgaagaaagagactcacgtgacggaatcaccgacgttaccaccacattgat |
28540473 |
T |
|
| Q |
300 |
gaaa |
303 |
Q |
| |
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|||| |
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|
| T |
28540472 |
gaaa |
28540469 |
T |
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