View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_36 (Length: 312)
Name: NF1690_low_36
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 46998619 - 46998782
Alignment:
| Q |
138 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgataaataaatacaatatgaacgaccgtgctg |
237 |
Q |
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| T |
46998619 |
ttcttataaagattattagtaataaaaaattattaaaccaaatgataatgcattgtctgtatatatatgacaaataaatacaatatgaacgaccgtgccg |
46998718 |
T |
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| Q |
238 |
cacgctcccacaatcgacaaatacaatattg-tttgtactatgataatacaatatggtccttca |
300 |
Q |
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| T |
46998719 |
cacgctcccacaatcgacagatacaatattgttttgtactatgataatacaatatggttcttca |
46998782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 46998510 - 46998588
Alignment:
| Q |
19 |
gggacatggtttgataaaacattcagaaacaaggtttagagaaggagtgttcatttttcagatggcaaaaggacacaga |
97 |
Q |
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| T |
46998510 |
gggacatggtttgataaaacattcagaaacaaggtttagagaaggagtgttcatttttcagatggcaaaaggacacaga |
46998588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 47002104 - 47002169
Alignment:
| Q |
19 |
gggacatggtttgataaaacattcagaaacaaggtttagagaaggagtgttcatttttcagatggc |
84 |
Q |
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| T |
47002104 |
gggatatggtttgatgaaacattcagaaacaaggtttagagaaggagtattcatttttcagatggc |
47002169 |
T |
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