View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_37 (Length: 311)
Name: NF1690_low_37
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 51 - 302
Target Start/End: Complemental strand, 25868116 - 25867865
Alignment:
| Q |
51 |
ataaaaaggaacttgggaatctaaaggaaaatattgaatccaagaagaggcagtaccacaacatggatcttcaaagttctttgactcaagaggtttgatt |
150 |
Q |
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| T |
25868116 |
ataaaaaggaacttgggaatctaaaggaaaatattgaatccaagaagaggcagtaccacaacatggatcttcaaagttctttgactcaagaggtttgatt |
25868017 |
T |
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| Q |
151 |
tattgtctgattatttagctatttgtaaacttatgacaacaaattctagtagatttatccctgttatgcatggcttagataatttttgaatcaaagaatg |
250 |
Q |
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| T |
25868016 |
tattgtctgattatttagctatttgtaaacttatgacaacaaattctagtagatttatccctgttatgcatgacttagataatttttgaatcaaagaatg |
25867917 |
T |
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| Q |
251 |
tagtattcgttttacacttttacttatggacaaaacttttgttgatattctt |
302 |
Q |
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| T |
25867916 |
tagtattcgttttacacttttacttatggacaaaacttttgttgattttctt |
25867865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 202
Target Start/End: Complemental strand, 25865944 - 25865786
Alignment:
| Q |
51 |
ataaaaaggaacttgggaatctaaaggaaaatattgaatccaagaagaggcagtaccacaacatggatcttcaaagttctttgactcaagag-------g |
143 |
Q |
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| T |
25865944 |
ataaaaaggaactggggaatctaaagcaaagcattgaatccaagaagaagcaaaacaacaacatggatcttcaaagctctttgactcaagaggtacacag |
25865845 |
T |
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| Q |
144 |
tttgatttattgtctgattatttagctatttgtaaacttatgacaacaaattctagtag |
202 |
Q |
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| T |
25865844 |
tatgattgattgtcttattatttagctatttgtaaacttataactacaaattcaagtag |
25865786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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