View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_4 (Length: 620)
Name: NF1690_low_4
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 416 - 602
Target Start/End: Original strand, 42078812 - 42078998
Alignment:
| Q |
416 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
515 |
Q |
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| T |
42078812 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
42078911 |
T |
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| Q |
516 |
tgaactataatttttgaaaagaataacatgttcacattgtttggaaaatgttttgtctcgaagcagctccaactgaaggtttggaaa |
602 |
Q |
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| T |
42078912 |
tgaactataatttttgaaaagaataacatgttcacatggtttggaaaatgttttgtctccaagcagctccaactgaaggtttggaaa |
42078998 |
T |
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