View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_41 (Length: 298)
Name: NF1690_low_41
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39315089 - 39314806
Alignment:
| Q |
1 |
cttagcacacaacaaaacatgttaaatatgttttatgtccctataaaattaacaaaacgggtcaaatataatggtaaaatgatactagtgtgtttgtcta |
100 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39315089 |
cttagcacgcaacaaaacatgttaaatatgttttaggtccctataaaattaacaaaacggatcaaatataatggtaaaatgatactagtgtgtttgtcta |
39314990 |
T |
|
| Q |
101 |
ttttattttgtatttttgacaaatatatttgtttatcttaggcactgaccaatgggttgtacaagagttgcctacatagggttttggtaagcaacgagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39314989 |
ttttattttgtatttttgacaaatatatttgtttatcttaggcactgaccaatgggttgtacaagagttgcctacatagggttttggtaagcaacgagct |
39314890 |
T |
|
| Q |
201 |
ggagaggaagtccttgacttttttcttgaatccaagaggagacaaaacagtgagtcctccaaatgagcttttggaaaatgaaga |
284 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39314889 |
ggagaggaagtccttgactttcttcttgaatccaagaggagacaaaacagtgagtcctccaaatgaacttttggaaaatgaaga |
39314806 |
T |
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