View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_42 (Length: 293)
Name: NF1690_low_42
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 38 - 278
Target Start/End: Complemental strand, 28236212 - 28235972
Alignment:
| Q |
38 |
tataatgtactaagtgtgagaatagttgagtgacattgtcaagcctatggttgataaataaggtccagcaggctagggaattggaatc-attaacgccat |
136 |
Q |
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| T |
28236212 |
tataatgtactaagtgtgagaatagttgagtgacattgtcaagcttatggttgataa-tgaggtccagcagactaggtaattggaatccattaacgccct |
28236114 |
T |
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| Q |
137 |
ttcttgggacactttggctacatcagttctacaaggccaacagggtatcaaagtcaaacaaatattgcttgtacgtagagccaatgtataatgccacaat |
236 |
Q |
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| T |
28236113 |
ttcttgggacactttggctacatcagttgtacaaggccaacagggtatcaaagttaaacaaatattgcttgtacgtagaaccaatgtataatgcaacaat |
28236014 |
T |
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| Q |
237 |
caagacatgcccaagttcaagggaacaatgtaccttatatat |
278 |
Q |
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| T |
28236013 |
caagacatgcccaggttcaagggaacaatgtaccttatatat |
28235972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28236456 - 28236414
Alignment:
| Q |
1 |
attctcgtttagaaatgattttgtctctagaattgagtataat |
43 |
Q |
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| T |
28236456 |
attctcgtttagaaataattttgtctctataattgagtataat |
28236414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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