View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_44 (Length: 291)
Name: NF1690_low_44
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 9117808 - 9118075
Alignment:
| Q |
10 |
aagaatatcccaaattttctattagatacttgttttta-ttaagattgaattaatacagagttccattactgaaaccagtacaatttttattcaaatttt |
108 |
Q |
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| T |
9117808 |
aagaatatcccaaattttctattagatacttgtttttaattaagattgaattaatacagagttccattactgaaaccagtacaatttttattcaaatttt |
9117907 |
T |
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| Q |
109 |
cttaacttaaagtcgaaattctacttgtcagannnnnnnnnn--atctgaagaatttaagggttatgagataaatgtgataaaaccagttagcttttgat |
206 |
Q |
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| T |
9117908 |
cttaacttaaagtcgaaattctacttatcagaatttttatctttatctgaagaatttaagggttatgagataaatgtgataaaaccagttagcttttgat |
9118007 |
T |
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| Q |
207 |
atttgatttgtagtatagtttaagaattggcttttacacatttcaaatgcaggatcaagtgctggaat |
274 |
Q |
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| T |
9118008 |
atttgatttgtagtatagtttaagaattggcttttacacatttcaaatgcaggatcaagtgctggaat |
9118075 |
T |
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