View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_47 (Length: 280)
Name: NF1690_low_47
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 42111999 - 42112163
Alignment:
| Q |
102 |
ccaagaatttgatccaacatcgaatgacttgaatctagaaaacccccactcaaaattcgtattcaacctatgagtatataaaatgttagttctacaattc |
201 |
Q |
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| T |
42111999 |
ccaagaattggatccaacattgaatgacttgaatctagaaaacccccactcaaaattcggattcaacctatgagtatataaaatgttagttctacaattc |
42112098 |
T |
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| Q |
202 |
ctcttctctgtacccctccaatctccatgatacaatactatgggagtggaggtcatgcccttgcc |
266 |
Q |
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| T |
42112099 |
ctcttctctgtacccctccaatctccatgatacaatactatgggagtgaaggtcatgcccttgcc |
42112163 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 14285617 - 14285669
Alignment:
| Q |
198 |
attcctcttctctgtacccctccaatctccatgatacaatactatgggagtgg |
250 |
Q |
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| T |
14285617 |
attccacttctctatccccttccaatctccatgatacgatactatgggagtgg |
14285669 |
T |
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