View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_49 (Length: 275)
Name: NF1690_low_49
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 34349316 - 34349562
Alignment:
| Q |
13 |
aatatgtgcctaaaattcaaacctaataaaaattgaaaaatcaattgagatatgcataagatgacatgaatgttacacaacgaatacgcgagattgtgtg |
112 |
Q |
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| T |
34349316 |
aatatgtgcctaaaattcaaacctaataaaaattgaaaaatcaattgagatatgcataagatgacatgaatgtta-acaatgaatacgcgagattgtgtg |
34349414 |
T |
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| Q |
113 |
ttttcgattaacttcaacagttcttcgtgaattaggcagataagtaggtgacagcaaagctaaacgatattcaatcgtcaaaccaacatctcggagagcc |
212 |
Q |
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| T |
34349415 |
tttttgattaacttaaacagttcttcgtgaattaggcagataagtaggtgacagcaaagctaaacgatattcaattgtcaaaccaacatctcggagagcc |
34349514 |
T |
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| Q |
213 |
ttagatagcagtgctagcattctagaatcgccaccataggcatcatct |
260 |
Q |
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| T |
34349515 |
ttagatagcagtgctagcattctagaatcgccaccataggcatcatct |
34349562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 260
Target Start/End: Complemental strand, 34605162 - 34605045
Alignment:
| Q |
143 |
attaggcagataagtaggtgacagcaaagctaaacgatattcaatcgtcaaaccaacatctcggagagccttagatagcagtgctagcattctagaatcg |
242 |
Q |
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| T |
34605162 |
attagacatataagtaagtgatggcaaagctaaacgatattcaatcattgaaccaatctcttggagggcctcggatagaagtgctagcatcccagactca |
34605063 |
T |
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| Q |
243 |
ccaccataggcatcatct |
260 |
Q |
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| T |
34605062 |
ccaccatatgcatcatct |
34605045 |
T |
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