View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_5 (Length: 606)
Name: NF1690_low_5
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Original strand, 28035357 - 28035941
Alignment:
| Q |
18 |
atttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttat |
117 |
Q |
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| T |
28035357 |
atttgcaccatttgttccccaaagtaaactagttgaatgagatgcttagcaccacctgcttctataatagcattgcaatgagtctcatgtagatagttat |
28035456 |
T |
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| Q |
118 |
cagtctcagcaaatttgatgagagcttttgatgcttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatggcgcaatgaatcttgtttc |
217 |
Q |
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| T |
28035457 |
cagtctcagcaaatttgatgagagcttttgatgcttccgtagaaatcaccggttctgtttcatcgagcaacttcaccaatggcgcaatgaatcttgtttc |
28035556 |
T |
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| Q |
218 |
agttgctctaaaagtcctcgctaagttaccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcgacaactttgagaaactgttcc |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28035557 |
agttgctctaaaagtccttgctaagttaccaatagctttaacacaaggtatgagcaaatcctcggagtcacctttttcaacaactttgagaaactgttcc |
28035656 |
T |
|
| Q |
318 |
accacagcttttgcagcaggggcagttggtttgaaagcagagcgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035657 |
accacagcttttgcagcaggggcagttggtttgaaagcagaacgtctcaattctgcatgttctgctgccacagatgttatttccatcaaagccattgctg |
28035756 |
T |
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| Q |
418 |
aataatgttgcacatcatctgtacccttttccaacaaaaccgcgaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttct |
517 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28035757 |
aataatgttgcacatcatcagtacccttttccaacaaaaccgcaaaacacaaaagagctcttgattctgtaattgtatgacaaatagtaacatttcttct |
28035856 |
T |
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| Q |
518 |
acacaattgccataaagctctagctgccattgctttcatttgtgcctttgtttcaggatcttcaaattctctccctttgctactc |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28035857 |
acacaattgccataaagctctagctgccattgctttcatttgtgcctttgtttcaggatcttcaaattctctccctttgatactc |
28035941 |
T |
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