View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_50 (Length: 273)
Name: NF1690_low_50
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_50 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 34578028 - 34577798
Alignment:
| Q |
10 |
attatactttttggtgttaattttaggtttcgttttggtcccttaatttctgctttgttttatttggatcctgcaagactacaaatttgatcaatgtttt |
109 |
Q |
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| T |
34578028 |
attatactttttggtgttaattttaggtttcgttttggtcccttaatttttgctttgttttattttgatcctgcaagactacaaatttggtcaatgtttt |
34577929 |
T |
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| Q |
110 |
tcgtttcattttggtcacttgactgacaaatatcagatattttgatcttttaagttacaaaagcttaagacactttnnnnnnnntaatttaaaaccttag |
209 |
Q |
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| T |
34577928 |
tcgtttcattttgatcacttgactaacaaatatcagatattttgatcttttaagttaca----ctttaaaaa----------aaaaaattaaaaccttag |
34577843 |
T |
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| Q |
210 |
acactttagtgcttcttatcaggaactaaaatgttataatatatg |
254 |
Q |
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| T |
34577842 |
acactttagtgcttcttatcaggaactaaaatgttataatatatg |
34577798 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 39192490 - 39192554
Alignment:
| Q |
106 |
tttttcgtttcattttggtcacttgactgacaaatatcagatattttgatcttttaagttacaaa |
170 |
Q |
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| T |
39192490 |
tttttcattttattttggtcatttaacttataaatattagatattttcatcttttaagttacaaa |
39192554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 42859538 - 42859589
Alignment:
| Q |
111 |
cgtttcattttggtcacttgactgacaaatatcagatattttgatcttttaa |
162 |
Q |
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| T |
42859538 |
cgtttcattttggtcacttaacttaaaaatattagatgttttgatcttttaa |
42859589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 18837 - 18773
Alignment:
| Q |
106 |
tttttcgtttcattttggtcacttgactgacaaatatcagatattttgatcttttaagttacaaa |
170 |
Q |
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| T |
18837 |
tttttcgtttcatgttggtcatttaacttgcaaatattagatgatttgatcctttaagttacaaa |
18773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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