View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_51 (Length: 271)
Name: NF1690_low_51
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 31132442 - 31132689
Alignment:
| Q |
13 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaaga---ggttggttgctggcattatgagg |
109 |
Q |
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| T |
31132442 |
ttatacttatccgatttttcaagctgggccgagggtgtgtttagggaaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagg |
31132541 |
T |
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| Q |
110 |
gagtttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctttccggtaaagatcaaga |
209 |
Q |
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| T |
31132542 |
gagtttaggttgcttccagcgatggatgaaggggttgaaccagtgtttgattcacatcttacttcaattatgaaaggtggctttccggtaaagatcaaga |
31132641 |
T |
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| Q |
210 |
agcgcatc-tacacacatgaataaatctgattttacaatataatgtaa |
256 |
Q |
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| T |
31132642 |
agcgcatcttacacacatgaataaatctgattttacaatataatgtaa |
31132689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 31127734 - 31127934
Alignment:
| Q |
13 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctggcattatgagggag |
112 |
Q |
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| T |
31127734 |
ttatagttatgcggtttttcaggctgggccaagggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcag |
31127833 |
T |
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| Q |
113 |
tttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctttccggtaaagatcaagaagc |
212 |
Q |
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| T |
31127834 |
tttagggtggttcctgcaatggataaaggggttgagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagc |
31127933 |
T |
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| Q |
213 |
g |
213 |
Q |
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| T |
31127934 |
g |
31127934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 31078416 - 31078595
Alignment:
| Q |
13 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctggcattatgagggag |
112 |
Q |
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| T |
31078416 |
ttatagttatgcggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcag |
31078515 |
T |
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| Q |
113 |
tttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctt |
192 |
Q |
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| T |
31078516 |
tttagggtggttcctgcaatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaaaggtggctt |
31078595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38642955 - 38643038
Alignment:
| Q |
16 |
tacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctgg |
99 |
Q |
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| T |
38642955 |
tacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38643038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 38655863 - 38655946
Alignment:
| Q |
16 |
tacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctgg |
99 |
Q |
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| T |
38655863 |
tacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38655946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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