View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_52 (Length: 271)
Name: NF1690_low_52
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 258
Target Start/End: Original strand, 27390907 - 27391127
Alignment:
| Q |
58 |
ggactttatccttaaaattatcagaatttggctactt----ttgagaaataatctgaagattaattcttttcaagctaacatcttcggcttgagtggtaa |
153 |
Q |
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| T |
27390907 |
ggactttatccttaaaattatcagaatttggctacttgagattgagaaataatctgaagattaattcttttcaagctaacatcttcggcttgagtggtag |
27391006 |
T |
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| Q |
154 |
ttgacaggatagaggtgatggacgttgaagagcagc----------------gtgtgtatctacaaacactatgacgaacaagtaaatatgtgccgaatc |
237 |
Q |
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| T |
27391007 |
ttgacaggataaaggtgatggacgttgaagagcagcttctgtaaaagaagcggtgtgtatctacaaacactatgacgatcaagtaaacgtgtgccgaata |
27391106 |
T |
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| Q |
238 |
tgcgagctttttaagttagaa |
258 |
Q |
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| T |
27391107 |
tgcgagctttttaagttagaa |
27391127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 27384367 - 27384552
Alignment:
| Q |
1 |
tcaaacacctttttttctcctatgtttattcatcctttaannnnnnnnnnnnnnnnnggactttatccttaaaattatcagaatttggctactt-ttgag |
99 |
Q |
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| T |
27384367 |
tcaaacacctttttttctcctatgtttattcatcctttaattttattttatttt---ggactttatccttaaaattatcagaatttggctacttattgag |
27384463 |
T |
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| Q |
100 |
aaataatctgaagattaattcttttc-aagctaacatcttcggcttgagtggt-------aattgacaggatagaggtgatggacgttga |
181 |
Q |
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| T |
27384464 |
-aataatatgaagattaattcttttcaaagctaacatcttcggcttgagtggtcgttgacacttgacaggataaaggtgatggacgttga |
27384552 |
T |
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