View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_low_55 (Length: 260)

Name: NF1690_low_55
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_low_55
NF1690_low_55
[»] chr1 (12 HSPs)
chr1 (11-243)||(47711934-47712166)
chr1 (11-243)||(47758832-47759064)
chr1 (10-243)||(47716685-47716918)
chr1 (10-243)||(47744449-47744679)
chr1 (76-243)||(6524857-6525024)
chr1 (114-243)||(6503455-6503584)
chr1 (114-243)||(6511075-6511204)
chr1 (103-243)||(6498136-6498276)
chr1 (103-243)||(47774492-47774632)
chr1 (120-237)||(6515504-6515621)
chr1 (158-225)||(47770639-47770706)
chr1 (188-225)||(47689803-47689840)
[»] chr5 (5 HSPs)
chr5 (113-243)||(27369196-27369326)
chr5 (122-226)||(28874967-28875071)
chr5 (122-226)||(28860397-28860501)
chr5 (103-226)||(28829361-28829484)
chr5 (103-226)||(28855038-28855161)
[»] scaffold0341 (2 HSPs)
scaffold0341 (114-243)||(5137-5266)
scaffold0341 (114-243)||(12756-12884)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 47712166 - 47711934
Alignment:
Q  11 taatactattgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712166 taatactattgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaag 47712067  T
Q  111 tcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712066 tcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagt 47711967  T
Q  211 tagactacttggtttttgtctagaaggaagaga 243  Q
    |||||||||||||||||||||||||||||||||    
T  47711966 tagactacttggtttttgtctagaaggaagaga 47711934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 47759064 - 47758832
Alignment:
Q  11 taatactattgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47759064 taatactattgatttagatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaag 47758965  T
Q  111 tcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagt 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47758964 tcattgcagtcaaaaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagt 47758865  T
Q  211 tagactacttggtttttgtctagaaggaagaga 243  Q
    | ||||||||||||||||||| |||||||||||    
T  47758864 tcgactacttggtttttgtctggaaggaagaga 47758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 47716918 - 47716685
Alignment:
Q  10 ataatactattgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaa 109  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  | ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  47716918 ataatactattgatttagatgaacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggacaa 47716819  T
Q  110 gtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttag 209  Q
    || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47716818 gtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttag 47716719  T
Q  210 ttagactacttggtttttgtctagaaggaagaga 243  Q
    || |||||||||||||||||||||||||||||||    
T  47716718 tttgactacttggtttttgtctagaaggaagaga 47716685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 47744679 - 47744449
Alignment:
Q  10 ataatactattgatttagatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaa 109  Q
    ||||||||  ||||||| ||||||||||| |||||||||   || || ||| ||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  47744679 ataatactgatgatttacatgaacatcactttcttcatc---aaaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaa 47744583  T
Q  110 gtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttag 209  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47744582 gtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttag 47744483  T
Q  210 ttagactacttggtttttgtctagaaggaagaga 243  Q
    ||||||||||||||||||||||||||||||||||    
T  47744482 ttagactacttggtttttgtctagaaggaagaga 47744449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 6524857 - 6525024
Alignment:
Q  76 aatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 175  Q
    ||||||||| ||||||| |||  ||  ||||||||  ||||  |||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  6524857 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 6524956  T
Q  176 cttttagtcgctaagcttcaacatcgaaatttagttagactacttggtttttgtctagaaggaagaga 243  Q
     ||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||    
T  6524957 gttttagtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagaga 6525024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 6503584 - 6503455
Alignment:
Q  114 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag 213  Q
    |||| ||||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| ||||||||  ||||| |||||||    
T  6503584 ttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttag 6503485  T
Q  214 actacttggtttttgtctagaaggaagaga 243  Q
    | |||| |||||||| ||||||||||||||    
T  6503484 attactcggtttttgcctagaaggaagaga 6503455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 6511204 - 6511075
Alignment:
Q  114 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag 213  Q
    |||| ||||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||||||| ||||||||||| ||    
T  6511204 ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaacaccgaaatttagtaag 6511105  T
Q  214 actacttggtttttgtctagaaggaagaga 243  Q
    | |||| ||||| || ||||||||||||||    
T  6511104 attactcggtttctgcctagaaggaagaga 6511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 6498276 - 6498136
Alignment:
Q  103 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 202  Q
    ||||||||  ||||| || |||||||||||||  | ||| |||||||| |||   || ||||||||||| || ||||| || |||||||||||||| |||    
T  6498276 tggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccga 6498177  T
Q  203 aatttagttagactacttggtttttgtctagaaggaagaga 243  Q
    ||||||||||||||||| ||||| |  ||||||||||||||    
T  6498176 aatttagttagactactcggtttctcactagaaggaagaga 6498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 47774492 - 47774632
Alignment:
Q  103 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 202  Q
    ||||||| | ||||| |||||||| ||||| | | |||| |  ||||| ||| | |||||||| |||||||| |||||||| || || ||||||||||||    
T  47774492 tggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttcaacatcga 47774591  T
Q  203 aatttagttagactacttggtttttgtctagaaggaagaga 243  Q
    ||||||||||| |||||||||||  || ||||||| |||||    
T  47774592 aatttagttaggctacttggtttcagtttagaagggagaga 47774632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 6515621 - 6515504
Alignment:
Q  120 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactact 219  Q
    |||||||||| ||||  ||||| |||||||| ||| | || ||||||||||| ||| ||||  | ||||| |||||||| ||||||||||||||| ||||    
T  6515621 tcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttcctggctaaacttcaacaccgaaatttagttagattact 6515522  T
Q  220 tggtttttgtctagaagg 237  Q
     ||||| || ||||||||    
T  6515521 cggtttctgcctagaagg 6515504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 225
Target Start/End: Original strand, 47770639 - 47770706
Alignment:
Q  158 gaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttggttt 225  Q
    |||||||| ||||||||  | ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  47770639 gaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaatttagttagacttcttggttt 47770706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 47689803 - 47689840
Alignment:
Q  188 aagcttcaacatcgaaatttagttagactacttggttt 225  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  47689803 aagcttcaacatcgaaatttagttaaactactaggttt 47689840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 27369326 - 27369196
Alignment:
Q  113 attgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagtta 212  Q
    ||||| || |||||||||||||||||||| |  ||||| ||| |||| ||||| |||||||| |||||||| || || ||||||||||||||| ||||||    
T  27369326 attgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagtta 27369227  T
Q  213 gactacttggtttttgtctagaaggaagaga 243  Q
    | ||||||||||| ||||||||||| |||||    
T  27369226 ggctacttggtttctgtctagaagggagaga 27369196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 28875071 - 28874967
Alignment:
Q  122 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttg 221  Q
    ||||||||||| |  ||||| || ||||| ||||| |||||||||||||||||||||||| | || || |||||||| || ||||| |||||||||||||    
T  28875071 aaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttggttagactacttg 28874972  T
Q  222 gtttt 226  Q
    |||||    
T  28874971 gtttt 28874967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 28860501 - 28860397
Alignment:
Q  122 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttg 221  Q
    ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||| | || || |||||||| || |||||||||||||||||||    
T  28860501 aaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttagttagactacttg 28860402  T
Q  222 gtttt 226  Q
    |||||    
T  28860401 gtttt 28860397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 28829484 - 28829361
Alignment:
Q  103 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 202  Q
    ||||||||| ||||| || |||||||| || | |||||| || ||||| ||| | ||||||||||| ||||| | ||| || || || |||||||| |||    
T  28829484 tggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttggtggccaaacttcaacaccga 28829385  T
Q  203 aatttagttagactacttggtttt 226  Q
    |||||||||||||| |||||||||    
T  28829384 aatttagttagactccttggtttt 28829361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 28855161 - 28855038
Alignment:
Q  103 tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga 202  Q
    ||||||||| ||||| |||||||||||||| |  ||||| || ||||| ||| | ||||||||||||||| |  | ||  | ||||| |||||||||| |    
T  28855161 tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatcaa 28855062  T
Q  203 aatttagttagactacttggtttt 226  Q
    |||||||||||  |||||||||||    
T  28855061 aatttagttaggttacttggtttt 28855038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 5266 - 5137
Alignment:
Q  114 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag 213  Q
    |||| ||||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| ||||||||  ||||| |||||||    
T  5266 ttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttag 5167  T
Q  214 actacttggtttttgtctagaaggaagaga 243  Q
    | |||| |||||||| ||||||||||||||    
T  5166 attactcggtttttgcctagaaggaagaga 5137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 243
Target Start/End: Complemental strand, 12884 - 12756
Alignment:
Q  114 ttgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttag 213  Q
    |||| ||||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||||||| ||||||||||| ||    
T  12884 ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttttagtggctaaacttcaacaccgaaatttagtaag 12786  T
Q  214 actacttggtttttgtctagaaggaagaga 243  Q
    | |||| ||||| || ||||||||||||||    
T  12785 attactcggtttctgcctagaaggaagaga 12756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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