View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1690_low_60 (Length: 254)
Name: NF1690_low_60
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1690_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 230
Target Start/End: Original strand, 8441956 - 8442168
Alignment:
| Q |
13 |
aatatagtttaaataaggtaacagcaaactgatttgactaggagtaatagattaaatagttgaagatgttggatcttcttcaagatctgacctatggaga |
112 |
Q |
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| T |
8441956 |
aatatagtttaaataaggtaagagtaaactgatttgactaggagtaatagattaa-tagttgaagatgttggatcttcttcaagatctgacctatggaga |
8442054 |
T |
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| Q |
113 |
ccactttgaataaataaatactttactttctgttaatcctctagaaggagattgttacattttttgtgttacattgttatatgtaataaaaagggctgta |
212 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8442055 |
ccactttgaata----aatactttactttctgttaatcctctagaaggagattgttacattttttgtgttacattgttatatgtaataaaaagggctgta |
8442150 |
T |
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| Q |
213 |
actattacaaattaatta |
230 |
Q |
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| T |
8442151 |
attattacaaattaatta |
8442168 |
T |
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