View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1690_low_64 (Length: 251)

Name: NF1690_low_64
Description: NF1690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1690_low_64
NF1690_low_64
[»] chr4 (3 HSPs)
chr4 (1-241)||(105999-106239)
chr4 (186-230)||(166547-166591)
chr4 (17-59)||(166715-166757)
[»] chr7 (2 HSPs)
chr7 (162-241)||(13054476-13054555)
chr7 (9-99)||(13054763-13054856)
[»] chr3 (1 HSPs)
chr3 (9-108)||(12135541-12135640)
[»] scaffold0013 (2 HSPs)
scaffold0013 (9-105)||(90399-90498)
scaffold0013 (178-227)||(90709-90758)
[»] chr8 (7 HSPs)
chr8 (9-94)||(5652560-5652645)
chr8 (9-99)||(5687139-5687229)
chr8 (9-102)||(5666132-5666226)
chr8 (186-236)||(5666314-5666364)
chr8 (186-236)||(5687384-5687434)
chr8 (9-99)||(5719256-5719346)
chr8 (186-236)||(5719500-5719550)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 106239 - 105999
Alignment:
Q  1 ctctctgtctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatta 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  106239 ctctctgcctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatcggcttccttcgagaggtacatatatctgcattatta 106140  T
Q  101 ttatttagcaagacattattattgtcaattcattttgaagtcagcgaatgattggtaactaattagtaataaatactcaattatgaaccttttttgggct 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106139 ttatttagcaagacattattattgtcaattcatgttgaagtcagcgaatgattggtaactaattagtaataaatactcaattatgaaccttttttgggct 106040  T
Q  201 tgaaagatagctctccccccacccaccatcctctctctgtg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  106039 tgaaagatagctctccccccacccaccatcctctctctgtg 105999  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 166591 - 166547
Alignment:
Q  186 aaccttttttgggcttgaaagatagctctccccccacccaccatc 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  166591 aaccttttttgggcatgaaagatagctctccccccacccaccatc 166547  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 166757 - 166715
Alignment:
Q  17 catgaattaaacccataagagcccatgcagtatgtacaacatt 59  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  166757 catgaattaaagccataagagcccatgcagtttgtacaacatt 166715  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 13054555 - 13054476
Alignment:
Q  162 attagtaataaatactcaattatgaaccttttttgggcttgaaagatagctctccccccacccaccatcctctctctgtg 241  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  13054555 attagtaataattactcaattatgaaccttttttgggcatgaaagatagctctctccccacccaccatcctctctttgtg 13054476  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 13054856 - 13054763
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggat--ct-gcttccttcgagaggtacatatatctgcaatatt 99  Q
    |||||| |||| |||||||| ||| ||| |||||||||| ||||||||||| |||  || ||||||||| ||||||| |||| |||||| ||||    
T  13054856 ctggccagcataaattaaactcatgagaccccatgcagtttgtacaacatttgattgctggcttccttcaagaggtatatatttctgcattatt 13054763  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 12135541 - 12135640
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatattattatttag 108  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||||| |||||||| |||||||  |||||||||| ||||| |||||||    
T  12135541 ctggccagcatgaattaaacccagaagagcccatgcagtctgtacaagatttgatctacttccttcaagaggtatgtatatctgcattattaatatttag 12135640  T

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Target: scaffold0013 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 90399 - 90498
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattgga-tc--tgcttccttcgagaggtacatatatctgcaatattattatt 105  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||   ||||||||| ||||||||||||| ||||| ||||||||||    
T  90399 ctggccagcatgaattaaacccataagagcccatgcagtttgtacaacatttgactcctggcttccttcaagaggtacatatacctgcattattattatt 90498  T

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Target: scaffold0013; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 90709 - 90758
Alignment:
Q  178 caattatgaaccttttttgggcttgaaagatagctctccccccacccacc 227  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||| |||||    
T  90709 caattatgaacctttttagggcatgaaagatagctctctccccaaccacc 90758  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 5652560 - 5652645
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca 94  Q
    |||||| |||||||||||||||||||||||||||||||| || |||| ||| ||||  | ||||||||||||||||||| ||||||    
T  5652560 ctggccagcatgaattaaacccataagagcccatgcagtttgaacaatatttgatcgacctccttcgagaggtacatatgtctgca 5652645  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 5687139 - 5687229
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 99  Q
    ||||||||||||||| ||| |||| ||||||||||| || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5687139 ctggccggcatgaatcaaagccattagagcccatgctgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5687229  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 5666132 - 5666226
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgca-atattatt 102  Q
    ||||||||||||||| ||| |||| ||||||||||  || ||||||| ||| |||  ||||||||| |||||| |||||||||||| ||||||||    
T  5666132 ctggccggcatgaatcaaagccattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtgcatatatctgcatatattatt 5666226  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 5666314 - 5666364
Alignment:
Q  186 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 236  Q
    ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||    
T  5666314 aaccttttttgagcttgaaagatggctctctccccatccaccatcctctct 5666364  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 5687384 - 5687434
Alignment:
Q  186 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 236  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5687384 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5687434  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 5719256 - 5719346
Alignment:
Q  9 ctggccggcatgaattaaacccataagagcccatgcagtatgtacaacattggatctgcttccttcgagaggtacatatatctgcaatatt 99  Q
    |||||| |||||||| ||| | || ||||||||||  || ||||||| ||| |||  ||||||||| ||||||||||||||||||| ||||    
T  5719256 ctggccagcatgaatcaaagctattagagcccatgatgtctgtacaatatttgattggcttccttcaagaggtacatatatctgcattatt 5719346  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 5719500 - 5719550
Alignment:
Q  186 aaccttttttgggcttgaaagatagctctccccccacccaccatcctctct 236  Q
    ||||||||||| || |||||||| |||||| ||||||||||||||||||||    
T  5719500 aaccttttttgagcatgaaagatggctctctccccacccaccatcctctct 5719550  T

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